1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagtttttaaaagaagaatctcaaattgaactgttatgttatttggttcacatgattgatctcttcttctccctttggcttgaatagGTTTTCCAGACGAAGTTTGCTAAAATTGGAGTGG
species | Arabidopsis thaliana |
transcript | AT2G27450.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTATCAAGAGAAG-TTTATTTCAATCCTGGAGATACTGGCTTTAAG GTTTTCCAGACGAAGTTTGCTAAAATTGGAGTGGEST: gi|125037175|gb|EL109444.1|EL109444
genomic: GTTATCAAGAGAAGTTTTATTTCAATCCTGGAGATACTGGCTTTAAGgtagttttta ... gcttgaatagGTTTTCCAGACGAAGTTTGCTAAAATTGGAGTGG
EST: GTTATCAAGAGAAGTTTTATTTCAATCCTGGAGATACTGGCTTTAAG GTTTTCCAGACGAAGTTTGCTAAAATTGGAGTGGCTATATGT
genomic: GTTATCAAGAGAAGTTTTATTTCAATCCTGGAGATACTGGCTTTAAGgtagttttta ... gcttgaatagGTTTTCCAGACGAAGTTTGCTAAAATTGGAGTGGCTATATGT
gttatgttatttggttcacatgattgatctcttcttctccctttggcttgaatagGTTTTCCAGACGAAGTTTGCTAAAATTGGAGTGG
gattgat putative branch site (score: 4)
tctcttcttctccctt CT-rich tract
ttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtttttaaaagaagaatctcaaattgaactgttatgttatttggttcacatgattgatctcttcttctccctttggcttgaatagGTTTTCCAGACGAAGTTTGCTAAAATTGGAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG