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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaatcttagcttcttctagttattaattcatactatatgaaggttcaagtaatatatttttggttgcttagaaaattggaattttcttatatattgaacagGCAATGCGTCTTTTCGTGGGTGGACCAGTGTGGACTGCTTATAATCGCCCACATGACCATCTTCCTGCAAG

Basic information

species Arabidopsis thaliana
transcript AT2G26400.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125305068|gb|EL319153.1|EL319153
EST:     TATCATCGCTTCACCGTGGACTCGGACAACTATATGAAG                         GCAATGCGTCTTTTCGTGGGTGGACCAGTGTGGACTGCTTATAATCGCCCA
genomic: TATCATCGCTTCACCGTGGACTCGGACAACTATATGAAGgttcaatctt ... tattgaacagGCAATGCGTCTTTTCGTGGGTGGACCAGTGTGGACTGCTTATAATCGCCCA
EST: gi|116474360|gb|EG516952.1|EG516952
EST:     CTGCTGGAATATATCATCGCTTCACCGTGGACTCGGACAACTATATGAAG                         GCAATGCGTCTTTTCGTGGGTGGA
genomic: CTGCTGGAATATATCATCGCTTCACCGTGGACTCGGACAACTATATGAAGgttcaatctt ... tattgaacagGCAATGCGTCTTTTCGTGGGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtaatatatttttggttgcttagaaaattggaattttcttatatattgaacagGCAATGCGTCTTTTCGTGGGTGGACCAGTGTGGACTGCTTATAATCGCCCACATGACCATCTTCCTGCAAG
                     ttagaaaattggaatt  TA-rich tract