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...ttgttctggttcatatcttgcaccttgaaatagtgatattgacactttgcctatcatgtggtagtgaatcaatcactttacttttgtttattctgtttagGTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAG
species | Arabidopsis thaliana |
transcript | AT2G25910.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGATTACATATCGTTTGTTTCACTCCTTGCTGATCCACGTTACTGCG GTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGEST: gi|86035181|gb|DR330934.1|DR330934
genomic: ATGATTACATATCGTTTGTTTCACTCCTTGCTGATCCACGTTACTGCGgtacatttta ... ttctgtttagGTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCG
EST: AGATGATTACATATCGTTTGTTTCACTCCTTGCTGATCCACGTTACTGCG GTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAGEST: gi|86035176|gb|DR330929.1|DR330929
genomic: AGATGATTACATATCGTTTGTTTCACTCCTTGCTGATCCACGTTACTGCGgtacatttta ... ttctgtttagGTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAG
EST: AGATGATTACATATCGTTTGTTTCACTCCTTGCTGATCCACGTTACTGCG GTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAGEST: gi|86035179|gb|DR330932.1|DR330932
genomic: AGATGATTACATATCGTTTGTTTCACTCCTTGCTGATCCACGTTACTGCGgtacatttta ... ttctgtttagGTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAG
EST: AGATGATTACATATCGTTTGTTTCACTCCTTGCTGATCCACGTTACTGCG GTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAG
genomic: AGATGATTACATATCGTTTGTTTCACTCCTTGCTGATCCACGTTACTGCGgtacatttta ... ttctgtttagGTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAG
tttgcctatcatgtggtagtgaatcaatcactttacttttgtttattctgtttagGTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAG
cttttgtttattct CT-rich tract
tttacttttgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttctggttcatatcttgcaccttgaaatagtgatattgacactttgcctatcatgtggtagtgaatcaatcactttacttttgtttattctgtttagGTATATCCTATGAAGAGAAAGAAGAAGTTCGAGTTCTCATGCGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT