1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgctagctaatcttaaactctcagcaacaatgcttacttgagtttacctctgccactgtcagcatttaactcgcactatcttttcaactatgttttatagGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG
species | Arabidopsis thaliana |
transcript | AT2G24765.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATACAGATAGAATCGGGGTGGCGAAAGAGGAGTTTCATGCAATTTTAGAG GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAGEST: gi|124884405|gb|EH963307.1|EH963307
genomic: ATACAGATAGAATCGGGGTGGCGAAAGAGGAGTTTCATGCAATTTTAGAGgtaaagtact ... tgttttatagGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG
EST: ATAGAATCGGGGTGGCGAAAGAGGAGTTTCATGCAATTTTAGAG GAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG
genomic: ATAGAATCGGGGTGGCGAAAGAGGAGTTTCATGCAATTTTAGAGgtaaagtact ... tgttttatagGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG
acctctgccactgtcagcatttaactcgcactatcttttcaactatgttttatagGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG
atttaac putative branch site (score: 3)
aactatgttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctagctaatcttaaactctcagcaacaatgcttacttgagtttacctctgccactgtcagcatttaactcgcactatcttttcaactatgttttatagGAAGATGAATTGAAAGGTGCGGTGGTTCTGATATTTGCAAACAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - -taaactc
- - - - - - - - - - -cagcaac
- - - - - - - - - - - - - - - - - - - - - - - cctctgc