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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatcagtttcctctttgtttgtgaatcgaagtactctggatcatgtggacttaccagactgattgtttgcttctttgatataatccagATGATGCAGAATCTGCTGCTGCAAGAAGGAGACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAG

Basic information

species Arabidopsis thaliana
transcript AT2G21270.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21270.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA04G00980.1 (Glycine max), 3'ss of exon 5
-----------------gtaagaat-cagtttcctctttgtttgtgaatcgaagtactctggatcatgtggacttaccagactgattgtttgcttctttgatat--aatccagATGATGCAGAATCTGCTGCTGCAAGAAGGAGACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAG
                 | || | |     | |||  ||    ||  |  |  || |||    |  | | |  |    |  |    |  || ||| |  ||| |   || ||||||||||||||||||||  ||||||| |||||||| || ||||| | |   ||  | |||||||||||||| || |||||| ||||||| |||||||  |
gtaggaccagaggaactgaaacattatgaataccttgttaccagtagaatg--gttctccaagtt-tctagtttcttaatgcatgctagtttcttatgagatgttttatacagATGATGCAGAATCTGCTTTTGCAAGAGGGAGACATCGTAAGAGTGAAATTCGTATCACTTCCAAAGGGAACATATGTTAAATTACAGCCACACACAAAGG

upper sequence: AT2G21270.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv03s0038g00750.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------gtaagaatcagtttcctctttgtttgtgaatcgaagtactctggat----catgtggacttaccagactgattgtttgcttctttgatataatccagATGATGCAGAATCTGCTGCTGCAAGAAGGAGACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAG
                                   |||      |  |   |   |||  || | |   | ||||   |||    |  | | ||| |      |  |  |    ||  ||| |      ||||||||| | ||  ||||  | ||||| ||||||| ||||   || | |||||| |||||||| |||||||| || || |||||||||||||| |||||||
gtaggcatccaaaagcatttgtctgtataagcctggtattgcaaacatattttgctgtaggtcagttttactactgcagatgtctccagggcactcattcctgttgtgatccttttaattgtttcctgtcagATGATGGAAAACATGCTATTACAAGAGGGAGACACTGTGCAGGTGAAAAATGTGACTCTTCCGAAGGGAACATATGTAAAACTACAGCCCCATACAACAG

upper sequence: AT2G21270.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: PP1S245_32V6.2 (Physcomitrella patens), 3'ss of exon 5
--------------------------------------------------------------------------------gtaagaatcagtttcct---ctttg----tttgtgaatcgaagtactctggatcatgtggacttaccagactgattgtttgcttctttgatataatccagATGATGCAGAATCTGCTGCTGCAAGAAGGAGACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAG
                                                                                  ||| ||  || || |   ||| |    ||| ||| |  | || |||||   ||  | |   | |   |  |||    ||  |   ||  | | | ||||||||||||||| ||||| |||| ||||| |||||||| ||||| |  | ||  || || || || ||||| |  || ||||| |||||||| |||| ||
gtataaaattcatcatccttggacttcttcaattattgttctgaaccgcttatttctactactgcaaaaaataatttgagaaaaggatgtgtctcattgacttcgaacttttttgactttaggtgctctgag-cagcttgtggtgctgta--gatgacgtgtgtgagtggcaca-tgcagATGATGCAGAATATGCTGTTGCAGGAAGGTGACATTGTTAGAGTGAAGAGTGCTACGCTGCCCAAAGGAACATTTGTGAAACTTCAGCCCCATACAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctggatcatgtggacttaccagactgattgtttgcttctttgatataatccagATGATGCAGAATCTGCTGCTGCAAGAAGGAGACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAG
                                     ttctttgatataat  TA-rich tract