1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgctactacgcaaatgatgagctgctgctattcatttccctacttctaggcatgctgttttcataccctgctgtaatatctaaaacgctttcctttcctatatcagTTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAG
species | Arabidopsis thaliana |
transcript | AT2G20420.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCG TTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAGEST: gi|116476127|gb|EG518719.1|EG518719
genomic: TCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCGgtatgctact ... cctatatcagTTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAG
EST: TCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCG TTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAGEST: gi|86045986|gb|DR341741.1|DR341741
genomic: TCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCGgtatgctact ... cctatatcagTTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAG
EST: TCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCG TTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATNTTGCTGAGEST: gi|86045998|gb|DR341753.1|DR341753
genomic: TCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCGgtatgctact ... cctatatcagTTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAG
EST: TCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCG TTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAGEST: gi|125005302|gb|EL077571.1|EL077571
genomic: TCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCGgtatgctact ... cctatatcagTTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAG
EST: TCAATGAGATGTACTTTTCCATTA-TCTGGACCGTAAATCTGCTGGACCG TTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGEST: gi|124779998|gb|EH869941.1|EH869941
genomic: TCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCGgtatgctact ... cctatatcagTTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTG
EST: ATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCG TTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAGEST: gi|86045989|gb|DR341744.1|DR341744
genomic: ATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCGgtatgctact ... cctatatcagTTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAG
EST: TCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCG TTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAGEST: gi|116485864|gb|EG528456.1|EG528456
genomic: TCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCGgtatgctact ... cctatatcagTTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAG
EST: TCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCG TTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAG
genomic: TCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCGgtatgctact ... cctatatcagTTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAG
atgctgttttcataccctgctgtaatatctaaaacgctttcctttcctatatcagTTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAG
atctaaa putative branch site (score: 3)
ctttcctttcctatat putative PPT
tgtaatatctaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctactacgcaaatgatgagctgctgctattcatttccctacttctaggcatgctgttttcataccctgctgtaatatctaaaacgctttcctttcctatatcagTTGATCATTGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGATCATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT