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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatactgtttttctggtctcagtttgtgatactgtttttaagtttagttgtctgacccggtgatcttgaaaatggacagGTGTGATTCTGCTTTTTTATCAGGTGTCACTTTGATGCTCCTCACTTGCATTGTGTGGCTAAAGTTGGTTTCTTATGCTCATACTAGCTATGACATAAGA

Basic information

species Arabidopsis thaliana
transcript AT2G19450.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19450.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA09G07520.1 (Glycine max), 3'ss of exon 5
------------------------gtgatactgtttttctggtctcagtttgt-gatactgtttttaagtttagttgtctgacccggtgatcttgaaaatggacagGTGTGATTCTGCTTTTTTATCAGGTGTCACTTTGATGCTCCTCACTTGCATTGTGTGGCTAAAGTTGGTTTCTTATGCTCATACTAGCTATGACATAAGA
                        || ||| |   |  |||   ||| ||  | ||||    |   ||   ||  |     | | |||  | ||     ||  ||||||||||||||||||| |||| |||||||| ||||||||  | ||||||||||||||| |||| ||||| || ||||| ||||| | |||||| || |||
tacagtaaagatgtctgcttgttggttataataggtaactg--ttcatttcattgatatcaatagcaaagataacttatgaatctggtacttttc----tgtgcagGTGTGATTCTGCTTTTGTATCTGGTGTCACGTTGATGCTATTAACTTGCATTGTGTGGTTAAAATTGGTGTCATATGCACATACAAACTATGATATGAGA

upper sequence: AT2G19450.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA17G06120.1 (Glycine max), 3'ss of exon 5
-----gtgatactgt--ttttctggtctcagtttgtgatactgtttttaagtttagttgtctgaccc-ggtgatcttgaaaatgga-----------cagGTGTGATTCTGCTTTTTTATCAGGTGTCACTTTGATGCTCCTCACTTGCATTGTGTGGCTAAAGTTGGTTTCTTATGCTCATACTAGCTATGACATAAGA
     | ||||  ||  || |   ||      || | |  |  ||  ||  |   | | ||  |    | ||||    ||  || |           ||||||||||||||||||| ||||||||||||| || |||||  |  ||||  |||| ||| |||| ||||| |||||||| ||||| | |||||| || |||
gctgcgggataaagtaattatacagttgtgcgttcttagtcatttcatagataaggatatcccagaaagatgattactaacttgtagcattcctttgcagGTGTGATTCTGCTTTTGTATCAGGTGTCACGTTAATGCTGTTTTCTTGTGTTGTATGGTTAAAATTGGTGTCTTATGCACATACAAACTATGATATGAGA

upper sequence: AT2G19450.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA13G16560.1 (Glycine max), 3'ss of exon 5
---------gtgatactgtttttctggtctcagtttgtgatactgtttttaagtttagttgtctgaccc-ggtgat------cttgaaaa----tggacagGTGTGATTCTGCTTTTTTATCAGGTGTCACTTTGATGCTCCTCACTTGCATTGTGTGGCTAAAGTTGGTTTCTTATGCTCATACTAGCTATGACATAAGA
          ||| |   || | | | | |   ||  |  |  | ||  ||  |   | | ||  |    | ||||      |||| ||     |   ||||||||||||||||||| |||||||||| || || |||||  |  ||||  |||| ||| |||| ||||| |||||||| ||||| | |||||| || |||
tgctgagggatgaaataattatacagttgtgcattcttagtcat-ttcatagataaggatatcccagaaagatgattactgacttgtaacattctttgcagGTGTGATTCTGCTTTTCTATCAGGTGTTACGTTAATGCTATTTGCTTGTGTTGTATGGTTAAAATTGGTGTCTTATGCACATACAAACTATGATATGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgatactgtttttaagtttagttgtctgacccggtgatcttgaaaatggacagGTGTGATTCTGCTTTTTTATCAGGTGTCACTTTGATGCTCCTCACTTGCATTGTGTGGCTAAAGTTGGTTTCTTATGCTCATACTAGCTATGACATAAGA
                         gtctgac  putative branch site (score: 3)
          tttttaagtttagtt  TA-rich tract