Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgataaactagtagcttgcattcatctacggttttttgttaagactacattgatgacattttgcatttgtttattcagGTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGG

Basic information

species Arabidopsis thaliana
transcript AT2G18470.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18470.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA11G07180.1 (Glycine max), 3'ss of exon 6
---------------------------------------------------------------------gtgataaactagtagcttgcat-tcatctacggttttttgttaagactacattgatgacattttgcatttgttt-attcagGTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGG
                                                                      |  | || || ||     |||   ||  |   | | || || |  | | ||| |  |        ||   ||| |||||||| |||||||||||||| |||||||| ||  ||||||| || ||||||||||| |||||||| ||||||||||||||
gttcgacatatttacatattatatctatttaattaagtttatgtccacatatttacctagctatttcagctatttaattattattcaacatgctatgaatcttatgttttttaagcca-attaagtatgccgacaatgcattttattcagGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGG

upper sequence: AT2G18470.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA01G38110.1 (Glycine max), 3'ss of exon 3
------------------------------------------------gtgataaactagtagcttgcattcatctacggttttttgttaagactacattgatgacattttgcatttgtttattcagGTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGG
                                                 |  | ||  | || |   |||   |      | || ||||   |    ||  |  |        ||   ||| ||||||| |||||||||||||| |||||||| ||  ||||||| || ||||||||||| |||||||| ||||||||||||||
gttcaacatatttaattaagtttatgtccacatatttaccttcttcaactatttaatcattatccaacat--gttatgaatcttatgtttgaagctaatcaagtatgcggacaatgcattttttcagGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGG

upper sequence: AT2G18470.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA16G25490.1 (Glycine max), 3'ss of exon 4
--------------------------------------------gtgataaactagtagcttgcattcatctacggttttttgttaag--actacattgatgacattttgcatttgt-ttattcagGTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGG
                                             | |  |   | ||  |  ||   ||   |  | ||||||| ||  |   ||||||| |         ||  | |||  |||||  ||||||||||||| |||||||| ||   |||||  || || ||||| ||||||||||| |||||||| |||||
gtttcacatatcgacatttttttcataaagtctatatatttactttaactataaaatatatcacacatattaccaatgttttgttgaggaagctcattgattatgccaatggttcatcttaaccagGTCTCTGATTTTGGATTGGCTAAGTTGACCAATGATACTAATACACATGTCTCTACTCGTGTCATGGGAACATTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctacggttttttgttaagactacattgatgacattttgcatttgtttattcagGTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGG
                        cattgat  putative branch site (score: 4)
                                          tttgttt  putative PPT
        ttttttgttaa  TA-rich tract