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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttgctacataaacctgagcactagtttattagttttattccttgttaggtttaactacaaaggttgatttttttcggtgcagCGCAAATTTCCAGTGTCTTTTGGTCATTGAACACTGACCTTCACCAAGAGAAGGTCACAAATGCGCTTGAATATATATCCACAATGAAAGCGAACTTAGA

Basic information

species Arabidopsis thaliana
transcript AT2G18410.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876059|gb|AU236890.1|AU236890
EST:     TTCAGCGATGCCATTAGTTNCTGGTCTTTTAACAGATCTTCGAAGCCATG                         CGCAAATTTCCAGTGTCTTTTGGT-ATTGAACACTGACCTTCACCAAGA
genomic: TTCAGCGATGCCATTAGTTTCTGGTCTTTTAACAGATCTTCGAAGCCATGgtactttgct ... ttcggtgcagCGCAAATTTCCAGTGTCTTTTGGTCATTGAACACTGACCTTCACCAAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagttttattccttgttaggtttaactacaaaggttgatttttttcggtgcagCGCAAATTTCCAGTGTCTTTTGGTCATTGAACACTGACCTTCACCAAGAGAAGGTCACAAATGCGCTTGAATATATATCCACAATGAAAGCGAACTTAGA
                                        tttttttc  CT-rich tract
                                    ttgattttttt  TA-rich tract