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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttacacgaaccttttctcaactacttagaatgctgagattgttttatacgataatttggtgtgtaactaactgttggatattgaattgaatcataatgcagGAGGATGGAGAATAGCTTGAAGGAAGAACTGTTTATGTTGTTGTTTTCTTCTCTATATCCAGTTTTGTTACCTGTTTTTATTGTACTCTGTGGGAGGGCT

Basic information

species Arabidopsis thaliana
transcript AT2G18110.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124751836|gb|EH841966.1|EH841966
EST:     TCAATGAATATGTCCAGAGCTGTGACATTGTTGCCTTCAACAAGATAT                         GAGGATGGAGAA
genomic: TCAATGAATATGTCCAGAGTTGTGACATTGTTGCCTTCAACAAGATATgtaagttaca ... cataatgcagGAGGATGGAGAA
EST: gi|86079763|gb|DR375520.1|DR375520
EST:     GATCAATGAATATGTCCAGAGTTGTGACATTGTTGCCTTCAACAAGATAT                         GAGGATGGAGAATAGCTTGAAGGAAGAACTGTTTATGTTGTTGTTTTCTTC
genomic: GATCAATGAATATGTCCAGAGTTGTGACATTGTTGCCTTCAACAAGATATgtaagttaca ... cataatgcagGAGGATGGAGAATAGCTTGAAGGAAGAACTGTTTATGTTGTTGTTTTCTTC
EST: gi|116457587|gb|EG500179.1|EG500179
EST:     GATCAATGAATATGTCCAGAGTTGTGACATTGTTGCCTTCAACAAGATAT                         GAGGATGGAGAATAGCTTGAAGGAAGAACTGTTTATGTTGTTGTTTT
genomic: GATCAATGAATATGTCCAGAGTTGTGACATTGTTGCCTTCAACAAGATATgtaagttaca ... cataatgcagGAGGATGGAGAATAGCTTGAAGGAAGAACTGTTTATGTTGTTGTTTT
EST: gi|124737193|gb|EH828595.1|EH828595
EST:     GATCAATGAATATGTCCAGAGTTGTGACATTGTTGCCTTCAACAAGATAT                         GAGGATGGAGAATAGCTTGAAGGAAGAACTGTTTATGTTG
genomic: GATCAATGAATATGTCCAGAGTTGTGACATTGTTGCCTTCAACAAGATATgtaagttaca ... cataatgcagGAGGATGGAGAATAGCTTGAAGGAAGAACTGTTTATGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacgataatttggtgtgtaactaactgttggatattgaattgaatcataatgcagGAGGATGGAGAATAGCTTGAAGGAAGAACTGTTTATGTTGTTGTTTTCTTCTCTATATCCAGTTTTGTTACCTGTTTTTATTGTACTCTGTGGGAGGGCT
                  aactaac  putative branch site (score: 1)
                               atattgaattgaat  TA-rich tract