Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacttatgcactacctttgacctttgagtcttctctatcttaaatctggtcttatagtttctcttcgaaatctttggggtgtctttggcactggttagtgactctgtgttctgtgtgttcttgctttttatagACACTTCCAGATTCAGGCTAACTCATGAAACATCTTTTGTGAGAGCGCACACCAGTTTCTGGACCCGGATTCCATTCTTTTTCTATGTT

Basic information

species Arabidopsis thaliana
transcript AT2G17480.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17480.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 5
gtatacttatgcactacctttgacctttgagtcttctctatcttaaatctggtcttatagtttctc---ttcgaaatc---tttggggtgtctttggcactggttagtgactctgtgttctgtgtgttcttgctt-tttatagACACTTCCAGATTCAGGCTAACTCATGAAACATCTTTTGTGAGAGCGCACACCAGTTTCTGGACCCGGATTCCATTCTTTTTCTATGTT
||| | |  || |  |  | | |    |   |  | | | |  ||  |  |    |  |  | |||   || ||||     |   |   |  ||    ||     |         || |   ||  ||  | |||  ||  |||  || | ||||||||||| || ||||| || ||||| |||||||| |||||||||||||||||| ||||||||||||| || ||||||
gtacattgctgaatgatatctaaaagatccattctttattttctagcttagcatatgaaaatcctcagttttgaaaatggatccagaaagatttcctaaccccccaaattactgatgataactggctttatccttacttgcagATGCTGCAAGATTCAGGCTTACCCATGAGACGTCTTTCGTGAGAGCACACACCAGTTTCTGGACCAGGATTCCATTCTTCTTTTATGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtctttggcactggttagtgactctgtgttctgtgtgttcttgctttttatagACACTTCCAGATTCAGGCTAACTCATGAAACATCTTTTGTGAGAGCGCACACCAGTTTCTGGACCCGGATTCCATTCTTTTTCTATGTT
                                     tgttcttgcttttt  CT-rich tract
                                              tttttata  TA-rich tract