1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacaatcattccctctttcaacatcttattgggttattaggagatcattgagatgctggttatcaaacatgttttgttttcgggatgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGAGGGAGCTGTTGCAGCAAGAACCGGGCATTGCTCAACAGATTATGTCCA
species | Arabidopsis thaliana |
transcript | AT2G07340.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGEST: gi|86036312|gb|DR332065.1|DR332065
genomic: GTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGEST: gi|164124025|gb|ES072895.1|ES072895
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAEST: gi|124998337|gb|EL070606.1|EL070606
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGA
EST: TCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGEST: gi|86079502|gb|DR375259.1|DR375259
genomic: TCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGEST: gi|164064089|gb|ES036112.1|ES036112
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGNGAAGCAGGTAGCAGAGGTEST: gi|86036311|gb|DR332064.1|DR332064
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGT
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGEST: gi|86036314|gb|DR332067.1|DR332067
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGEST: gi|86036302|gb|DR332055.1|DR332055
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGEST: gi|86036303|gb|DR332056.1|DR332056
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGEST: gi|86036310|gb|DR332063.1|DR332063
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGEST: gi|86036301|gb|DR332054.1|DR332054
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
EST: ACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTACTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTEST: gi|86036305|gb|DR332058.1|DR332058
genomic: ACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTT-CTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTT
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGEST: gi|86036306|gb|DR332059.1|DR332059
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGEST: gi|164083520|gb|ES013109.1|ES013109
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
EST: AACAAGAGC-AAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTEST: gi|86036307|gb|DR332060.1|DR332060
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGT
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGNTGAGAACAACTTGEST: gi|86036309|gb|DR332062.1|DR332062
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGEST: gi|86036308|gb|DR332061.1|DR332061
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGEST: gi|86036313|gb|DR332066.1|DR332066
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
EST: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAG ACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
genomic: AACAAGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGgtaacaatca ... tgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTG
gagatcattgagatgctggttatcaaacatgttttgttttcgggatgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGAGGGAGCTGTTGCAGCAAGAACCGGGCATTGCTCAACAGATTATGTCCA
ttttt CT-rich tract
atgattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaatcattccctctttcaacatcttattgggttattaggagatcattgagatgctggttatcaaacatgttttgttttcgggatgatttttagACATCCAAGGAATACTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGAGGGAGCTGTTGCAGCAAGAACCGGGCATTGCTCAACAGATTATGTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC