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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaaatctactcatccaaaaactttgatcacagcacattattgatcttttgattttttttatttttttcagACAAGCTCTAAGACAATTAGCAAGCTAGCACATCCAAATGCTCCCCTCGGTTACGCACTTTGTTCCTTAAACCTCGCCTTTGACGGATTCACAAATGCCA

Basic information

species Arabidopsis thaliana
transcript AT2G02810.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02810.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA02G02330.1 (Glycine max), 3'ss of exon 5
----------------------gtatgtaaatctactcatccaaaaactttgatca-cagcacattattgatc--ttttgattttttttatttt-tttcagACAAGCTCTAAGACAATTAGCAAGCTAGCACATCCAAATGCTCCCCTCGGTTACGCACTTTGTTCCTTAAACCTCGCCTTTGACGGATTCACAAATGCCA
                        |  |    || || ||  |   | ||| ||   |     |||   | |    |||  || ||| |   |  || ||||| ||||||||||| || |||||||| |||||||||||||||||||| || || |   | |||| | | ||||| || ||||| ||||| || ||||| |
gttaggaagttctcagaataacagagctcttccttcttatatagggattttcatagtctatgaattgcagcttagctttatttgtttatgcctgattacagACTAGCTCTAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGATATGGGTTGTGTTTCCTGAACCTTGCTTTTGATGGATTTACCAATGCAA

upper sequence: AT2G02810.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA01G05170.1 (Glycine max), 3'ss of exon 5
----------------------gtatgtaaatctactcatccaaaaactttga---tcacagcacattattgatcttttgattttttttatttttttcagACAAGCTCTAAGACAATTAGCAAGCTAGCACATCCAAATGCTCCCCTCGGTTACGCACTTTGTTCCTTAAACCTCGCCTTTGACGGATTCACAAATGCCA
                        |  |    || ||| |  |   | ||| |   |||  | |      | | ||||   | ||| |   |  || ||||| ||||| ||||| || |||||||| |||||||||||||||||||| || || |   | |||| | | ||||| || ||||| ||||| || ||||| |
gtttggaagttctcagaaaagcagagctcttccttctcttgtagggattttcatagtcaatgaatgcagcttagctttatttgtttatgcctgattacagACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGATATGGGTTGTGTTTCCTGAACCTTGCTTTTGATGGATTTACCAATGCAA

upper sequence: AT2G02810.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv01s0026g01890.t01 (Vitis vinifera), 3'ss of exon 5
---------------------------------------------gtatgtaaatctactcatccaaaaactttgatcacagcacattattgatcttttgattttttttattttt-------ttcagACAAGCTCTAAGACAATTAGCAAGCTAGCACATCCAAATGCTCCCCTCGGTTACGCACTTTGTTCCTTAAACCTCGCCTTTGACGGATTCACAAATGCCA
                                               |    ||| ||        |    |||| |   |      |   | | | ||  | |  |  ||  |        ||||||| || || ||||||||||||||| | ||||  |||||||| || || || || |  || |||| ||| ||||| || ||||| ||||||||||||||||
gtgaggatcatatatataagttatcagtggtggatcatcctgacaaaaaaataatatagcatcgggagttttttggttttaatttgcttgagttttgtttttctcatgcatactcgggttgattcagACTAGTTCCAAGACAATTAGCAAGTTGGCACGCCCAAATGCACCACTTGGATATGGGCTCTGTTTCTTGAACCTTGCATTTGATGGATTCACAAATGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaactttgatcacagcacattattgatcttttgattttttttatttttttcagACAAGCTCTAAGACAATTAGCAAGCTAGCACATCCAAATGCTCCCCTCGGTTACGCACTTTGTTCCTTAAACCTCGCCTTTGACGGATTCACAAATGCCA
                            tcttttgatttttttt  CT-rich tract
                  acattattgatctttt  TA-rich tract