Sequence
atgc intronic sequence ATGC exonic sequencegttgaagatttacttcttcaaaacatttttgcgatcgaatcttgtttctttgatttgttttgggctgatcatatatgttttttatcagtaacagAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G02710.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G02710.3 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA02G02600.6 (Glycine max), 3'ss of exon 5
-------------gttgaagatttacttcttcaaaacatttttgcgatcgaatcttgtttctttgatttgttt--tgggctgatcatatatgttttttatcagtaacagAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAG
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gtacgtattttgaattacaggttaatacttcacttttgtgtctgctgcctaagcc-gtgaagtttatttattgaatatgctga--attagttttctgcaacactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG
upper sequence: AT2G02710.3 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA02G02600.5 (Glycine max), 3'ss of exon 5
gttgaagatttacttcttcaaaacatttttgcgatcgaatcttgtttctttgatttgttt--tgggctgatcatatatgttttttatcagtaacagAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAG
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------------------------gtgtctgctgcctaagcc-gtgaagtttatttattgaatatgctga--attagttttctgcaacactaacaggaagGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG
upper sequence: AT2G02710.3 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA02G02600.1 (Glycine max), 3'ss of exon 5
gttgaagatttacttcttcaaaacatttttgcgatcgaatcttgtttctttgatttgtt--ttgggctgatcatatatgttttttatcagtaacagAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAG
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gttaatacttcactttt-------gtgtctgctgcctaagcc-gtgaagtttatttattgaatatgctga--attagttttctgcaacactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAG
upper sequence: AT2G02710.3 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA01G04920.1 (Glycine max), 3'ss of exon 5
gttgaagatttacttcttcaaaacatttttgcgatcgaatcttgtttctttgatttgtt--ttgggctgatcatatatgttttttatcagtaacagAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAG
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gttaatacttcactttt-------gtttctgctgcctaagct-gtgaagttgatttattgaatatgctga--attagttttctgcaacactaacagGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116453954|gb|EG496546.1|EG496546EST: GAATGCATCTTAAAGGGACAATCATGCACAGTGCAAATACTAAATTACAG T
genomic: GAATGCATCTTAAAGGGACAATCATGCACAGTGCAAATACTAAATTACAGgttgaagatt ... tcagtaacag-
EST:
gi|116453954|gb|EG496546.1|EG496546EST: GAATGCATCTTAAAGGGACAATCATGCACAGTGCAAATACTAAATTACAG T
genomic: GAATGCATCTTAAAGGGACAATCATGCACAGTGCAAATACTAAATTACAGgttgaagatt ... tcagtaacag-
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttgtttctttgatttgttttgggctgatcatatatgttttttatcagtaacagAAAAGATAAGAGCTCATTTTGGAATCTTCTTCACATCTCACCAGTTCGTAATGCTTCAGGCAAG
ggctgat putative branch site (score: 4)
ttttttatc putative PPT
atatatgttttttatc TA-rich tract