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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattcataatatcacttttatgctaattacatgttatattatctttattgttttctacattgatgtaccccaatttaattaactacgatagtttttcatgatttttttcacttattactgaagGAGAATAAAGTGGACTTGTACATAAATGGACATGATCACTGCTTGCAACACATTGGTTCTCACGG

Basic information

species Arabidopsis thaliana
transcript AT2G01880.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01880.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA05G26930.1 (Glycine max), 3'ss of exon 5
gtaaaattcataatatcacttttatgctaattacatgttatattatctttattgttttctacattgatgtaccccaatttaattaactacgatagtttttcatgatttttttcacttattactgaagGAGAATAAAGTGGACTTGTACATAAATGGACATGATCACTGCTTGCAACACATTGGTTCTCACGG---
                     | |  | |  |  |   | || |  | || |  |  |  | || | || |    || || |  |  |  ||    ||      | ||| |||| |||||  |  ||| |||  | || ||    ||||||||||||||||| ||||||||||| || ||   |    |      
--------------------ctgagaccatgttaaaactctaattcccttgtaatggttgaaatcgttgcatgaaaaatttacaatttctgaccagtt------agtttcttca-ttattggtccagGCGAACGATGTTGATGCATACATAAATGGACATGACCACTGCTTGCAGCATATAATTGACAATAATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccaatttaattaactacgatagtttttcatgatttttttcacttattactgaagGAGAATAAAGTGGACTTGTACATAAATGGACATGATCACTGCTTGCAACACATTGGTTCTCACGG
        aattaac  putative branch site (score: 2)
                                 tttttttcacttatt  putative PPT
                   atagtttttcatgatt  TA-rich tract