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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagattattattatctcacaacagattcaagggactataatttgaatgaatgaaccctaagtgttgttatttttggtttcagTTGTTATTTCTGAGAATACTCGGAATCATGCTACCCATCTACGTTGTCACCAAAGCAGTCGCCACCTGCCGCCGCCATTCTCGGACCTTAGACACCTCTC

Basic information

species Arabidopsis thaliana
transcript AT2G01275.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828434|gb|CK118118.1|CK118118
EST:     TCCCTTTAGTCCTCACCGGATCAAACCTTCATGTCTTCCCTTTGTTCACG                         TTGTTATTTCTGAGAATACTCGGAATCATGCTACCCATCTACGTTGTCACC
genomic: TCCCTTTAGTCCTCACCGGATCAAACCTTCATGTCTTCCCTTTGTTCACGgtgagattat ... ttggtttcagTTGTTATTTCTGAGAATACTCGGAATCATGCTACCCATCTACGTTGTCACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagggactataatttgaatgaatgaaccctaagtgttgttatttttggtttcagTTGTTATTTCTGAGAATACTCGGAATCATGCTACCCATCTACGTTGTCACCAAAGCAGTCGCCACCTGCCGCCGCCATTCTCGGACCTTAGACACCTCTC
                                       ttattttt  CT-rich tract
        tataatttgaatgaat  TA-rich tract