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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatgattgttcattatttcctatgactgaatgtagcaaattatagaatgttgactgattcatttatttgctgccatgaatttaatgatgtatgttggttttccttccagATATTGGGACACAAGACAGCAAAATCCTGTACATACCCAACAGCTTCCAGACAAATGTTATACATTGTCTGTGAAACATCCTCTGATGGTTGTCGGGACT

Basic information

species Arabidopsis thaliana
transcript AT1G80670.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164188124|gb|ES058532.1|ES058532
EST:     ATCCCGGGAATGAATCTCCTTGCAACTGGAAGTTGGGATAAAACTTTGAA                         ATATTGGGACACAAGACAGCAAAATCCTGTACATACCCAACAG
genomic: ATCCCGGGAATGAATCTCCTTGCAACTGGAAGTTGGGATAAAACTTTGAAgtaagaatga ... ttccttccagATATTGGGACACAAGACAGCAAAATCCTGTACATACCCAACAG
EST: gi|164109633|gb|ES035469.1|ES035469
EST:     TGGGATAAAACTTTGAA                         ATATTGGGACACAAGACAGCAAAATCCTGTACATACCCAACAGCTTCCAGA
genomic: TGGGATAAAACTTTGAAgtaagaatga ... ttccttccagATATTGGGACACAAGACAGCAAAATCCTGTACATACCCAACAGCTTCCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattcatttatttgctgccatgaatttaatgatgtatgttggttttccttccagATATTGGGACACAAGACAGCAAAATCCTGTACATACCCAACAGCTTCCAGACAAATGTTATACATTGTCTGTGAAACATCCTCTGATGGTTGTCGGGACT
                        atttaat  putative branch site (score: 4)
                                       ttggttttccttcc  putative PPT
                       aatttaatgatgtat  TA-rich tract