1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gctagtttctctcttaactgatactgcttgctattcgcttgtgaacatcaaataattatggatacttattaatggattgtgcagGCTGAGGCTCCAAAGAAGAAGGTGAAGAAAACAAATGTACCACTGTCTGAATTGGTCTATGGTGCCTTGAAAACTGTGGAGGTCGAAAAGGCAGTGGAGA
species | Arabidopsis thaliana |
transcript | AT1G79930.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGTTCCAGAGTCTGCTGAGAAGCCGGTGCAAATGGAAACTGATTCAAAG GCTGAGGCTCCAAAGAAGAAGGTGAAGAAAACAAATGTACCACTGTCTGAAEST: gi|86087379|gb|DR383138.1|DR383138
genomic: GTGTTCCAGAGTCTGCTGAGAAGCCGGTGCAAATGGAAACTGATTCAAAGgctagtttct ... gattgtgcagGCTGAGGCTCCAAAGAAGAAGGTGAAGAAAACAAATGTACCACTGTCTGAA
EST: GTGTTCCAGAGTCTGCTGAGAAGCCGGTGCAAATGGAAACTGATTCAAAG GCTGAGGCTCCAAAGAAGAAGGTGAAGAAAACAAATGTACCACTGTCTGAAEST: gi|86087897|gb|DR383656.1|DR383656
genomic: GTGTTCCAGAGTCTGCTGAGAAGCCGGTGCAAATGGAAACTGATTCAAAGgctagtttct ... gattgtgcagGCTGAGGCTCCAAAGAAGAAGGTGAAGAAAACAAATGTACCACTGTCTGAA
EST: GTGTTCCAGAGTCTGCTGAGAAGCCGGTGCAAATGGAAACTGATTCAAAG GCTGAGGCTCCAAAGAAGAAGGTGAAGAAAACAAATGTACCACTGTCTGAAEST: gi|86087380|gb|DR383139.1|DR383139
genomic: GTGTTCCAGAGTCTGCTGAGAAGCCGGTGCAAATGGAAACTGATTCAAAGgctagtttct ... gattgtgcagGCTGAGGCTCCAAAGAAGAAGGTGAAGAAAACAAATGTACCACTGTCTGAA
EST: GTGTTCCAGAGTCTGCTGAGAAGCCGGTGCAAATGGAAACTGATTCAAAG GCTGAGGCTCCAAAGAAGAAGGTGAAGAAAACAAATGTACCACTGTCTGAA
genomic: GTGTTCCAGAGTCTGCTGAGAAGCCGGTGCAAATGGAAACTGATTCAAAGgctagtttct ... gattgtgcagGCTGAGGCTCCAAAGAAGAAGGTGAAGAAAACAAATGTACCACTGTCTGAA
gctattcgcttgtgaacatcaaataattatggatacttattaatggattgtgcagGCTGAGGCTCCAAAGAAGAAGGTGAAGAAAACAAATGTACCACTGTCTGAATTGGTCTATGGTGCCTTGAAAACTGTGGAGGTCGAAAAGGCAGTGGAGA
tattaat putative branch site (score: 2)
atcaaataattatgga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctagtttctctcttaactgatactgcttgctattcgcttgtgaacatcaaataattatggatacttattaatggattgtgcagGCTGAGGCTCCAAAGAAGAAGGTGAAGAAAACAAATGTACCACTGTCTGAATTGGTCTATGGTGCCTTGAAAACTGTGGAGGTCGAAAAGGCAGTGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA