1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgagcaactaaacacatataaacacaagttttagtctcacttttgtctaaatccatttgtcttcaacatgtttgttaatcatctgtcttcaacatgtttgttaatcggagaaacccaacttaactaacccaatctcttgtcttgtttcaccatcagGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAAAGGGAGTAACCACAATCATTGGAGGAGGTGACTCTGTTGCTGCCGTCGAGAAGGTTGGTTTGGCAG
species | Arabidopsis thaliana |
transcript | AT1G79550.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGGTCCCATGGGTGTGTTTGAATTCGATAAGTTTGCTGCTGGAACTGAG GCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAAAGGGAGTAACCACAATCEST: gi|124834529|gb|EH918968.1|EH918968
genomic: ATGGTCCCATGGGTGTGTTTGAATTCGATAAGTTTGCTGCTGGAACTGAGgtatgagcaa ... tcaccatcagGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAAAGGGAGTAACCACAATC
EST: TGTGTTTGAATTCGATAAGTTTGCTGCTGGAACTGAG GCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAAAAGGGAGTAACCACAATEST: gi|164018997|gb|EL990581.1|EL990581
genomic: TGTGTTTGAATTCGATAAGTTTGCTGCTGGAACTGAGgtatgagcaa ... tcaccatcagGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAAA-GGGAGTAACCACAAT
EST: CGATAAGTTTGCTGCTGGAACTGAG GCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAAAGGGAGTAACCACAATCEST: gi|47831638|gb|CK121322.1|CK121322
genomic: CGATAAGTTTGCTGCTGGAACTGAGgtatgagcaa ... tcaccatcagGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAAAGGGAGTAACCACAATC
EST: ATGGTCCCATGGGTGTGTTTGAATTCGATAAGTTTGCTGCTGGAACTGAG GCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAAAGGGAGTAACCACAATC
genomic: ATGGTCCCATGGGTGTGTTTGAATTCGATAAGTTTGCTGCTGGAACTGAGgtatgagcaa ... tcaccatcagGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAAAGGGAGTAACCACAATC
taatcggagaaacccaacttaactaacccaatctcttgtcttgtttcaccatcagGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAAAGGGAGTAACCACAATCATTGGAGGAGGTGACTCTGTTGCTGCCGTCGAGAAGGTTGGTTTGGCAG
aactaac putative branch site (score: 1)
tctcttgtcttgtttc putative PPT
ttaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagcaactaaacacatataaacacaagttttagtctcacttttgtctaaatccatttgtcttcaacatgtttgttaatcatctgtcttcaacatgtttgttaatcggagaaacccaacttaactaacccaatctcttgtcttgtttcaccatcagGCCGTAGCAAAGCAGCTTGCAGAACTAAGCGGAAAGGGAGTAACCACAATCATTGGAGGAGGTGACTCTGTTGCTGCCGTCGAGAAGGTTGGTTTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC