1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtctctaactatatcattttctatgcatgtaattgaggtctggagatttgtttctcaaatctgcaaataagattttcagtgcttggaagtatctgtattcacattttacatctagttagttcatgtttgaaatacctgaccttgggttgtctcaagATTTCAGAAGATGTAAAACCTCCTCCACTAGTCTTGAAGACGTTAATCTTGATGTCGACACTATTTCCCAAAGCAAAGCTCTTTCCAAAGAGAGACTTGA
species | Arabidopsis thaliana |
transcript | AT1G77420.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTGTCGCTCCAATGTGTAAG ATTTCAGAAGATGTAAAACCTCCTCCACTAGTCTTGAAGACGTTAATCTTGEST: gi|116486369|gb|EG528961.1|EG528961
genomic: CTTGTCGCTCCAATGTGTAAGgtaagtctct ... ttgtctcaagATTTCAGAAGATGTAAAACCTCCTCCACTAGTCTTGAAGACGTTAATCTTG
EST: AAGAACCTCAAGCTTGGGATGGTCTTATCCTTGTCGCTCCAATGTGTAAG ATTTCAGAAGATGTAAAACCTCCTCCACTAGTCTTGAAGACGTTAATCTTG
genomic: AAGAACCTCAAGCTTGGGATGGTCTTATCCTTGTCGCTCCAATGTGTAAGgtaagtctct ... ttgtctcaagATTTCAGAAGATGTAAAACCTCCTCCACTAGTCTTGAAGACGTTAATCTTG
cattttacatctagttagttcatgtttgaaatacctgaccttgggttgtctcaagATTTCAGAAGATGTAAAACCTCCTCCACTAGTCTTGAAGACGTTAATCTTGATGTCGACACTATTTCCCAAAGCAAAGCTCTTTCCAAAGAGAGACTTGA
acctgac putative branch site (score: 3)
ttgtctc putative PPT
tttgaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctctaactatatcattttctatgcatgtaattgaggtctggagatttgtttctcaaatctgcaaataagattttcagtgcttggaagtatctgtattcacattttacatctagttagttcatgtttgaaatacctgaccttgggttgtctcaagATTTCAGAAGATGTAAAACCTCCTCCACTAGTCTTGAAGACGTTAATCTTGATGTCGACACTATTTCCCAAAGCAAAGCTCTTTCCAAAGAGAGACTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA