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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcaaatcctctaaacctgtctgtattactctctagtgtttgcttatcattctctgttttgtagATCAAAACTGGTGCTCCATGCCGAAGTGAACGATTGTCAAAATACAACCAG

Basic information

species Arabidopsis thaliana
transcript AT1G74030.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G74030.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os09g20820.1 (Oryza sativa), 3'ss of exon 5
-------------------------gtacatcaaatcctctaaacctgtctgtatt-actctctagtgtttgcttatcattctctgttttgtagATCAAAACTGGTGCTCCATGCCGAAGTGAACGATTGTCAAAATACAACCAG
                          ||  |    | |   ||  ||        | |     |  |  |  |  |    |   ||| ||| ||||||||||||||||||||||||| || ||  || || |||| ||||| |||
gtagggactatcaccatcagaaatcttaactgtggtaccaaaattctacgaacgctcatcagatgatcctaacacactcattcatgtgttgcagATCAAAACTGGTGCTCCATGCCGTAGCGAGAGACTGGCAAAGTACAATCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaaacctgtctgtattactctctagtgtttgcttatcattctctgttttgtagATCAAAACTGGTGCTCCATGCCGAAGTGAACGATTGTCAAAATACAACCAG
 ctctaaa  putative branch site (score: 3)
                                     tcattctctgtttt  putative PPT
                                  ttatcatt  TA-rich tract