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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctactctgttatatctgttgggttacaaggagtctagactctagatggttaagaattctcacaaaaacatttggttgtagATGAACTCAAGAGAAAGGAACTTCTCCAAAATTGGGCATTAAATTGGTGGAACTGCACAAACCAACCAATTGATCAGATCTACTCTTACTTTGGTGCAAA

Basic information

species Arabidopsis thaliana
transcript AT1G73020.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116423752|gb|EG466344.1|EG466344
EST:     TCGAAGGTTGGAATCAGAGGGCGTCATTAAACAAATGTTTCCTCTTCATG                         ATGAACTCAAGAGAAAGGAACTTCTCCAAAATTGGGCATTAAATTGGTGGA
genomic: TCGAAGGTTGGAATCAGAGGGCGTCATTAAACAAATGTTTCCTCTTCATGgtaagctact ... ttggttgtagATGAACTCAAGAGAAAGGAACTTCTCCAAAATTGGGCATTAAATTGGTGGA
EST: gi|116423945|gb|EG466537.1|EG466537
EST:     TCGAAGGTTGGAATCAAAGGGCGTCATTAAACAAATGTTTCCTCTTCATG                         ATGAACTCAAGAGAAAGGAACTTC
genomic: TCGAAGGTTGGAATCAGAGGGCGTCATTAAACAAATGTTTCCTCTTCATGgtaagctact ... ttggttgtagATGAACTCAAGAGAAAGGAACTTC
EST: gi|116435864|gb|EG478456.1|EG478456
EST:     TCGAAGGTTGGAATCAGAGGGCGTCATTAAACAAATGTTTCCTCTTCATG                         ATGAACTCAAGAGAAAGGAACTTCTCCAAAATTGGGCATTAAATTGGTGGA
genomic: TCGAAGGTTGGAATCAGAGGGCGTCATTAAACAAATGTTTCCTCTTCATGgtaagctact ... ttggttgtagATGAACTCAAGAGAAAGGAACTTCTCCAAAATTGGGCATTAAATTGGTGGA
EST: gi|116436358|gb|EG478950.1|EG478950
EST:     TCGAAGGTTGGAATCAGAGGGCGTCATTAAACAAATGTTTCCTCTTCATG                         ATGAACTCAAGAGAAAGGAACTTCTCCAAAATTGGGCATTAAATTGGTGGA
genomic: TCGAAGGTTGGAATCAGAGGGCGTCATTAAACAAATGTTTCCTCTTCATGgtaagctact ... ttggttgtagATGAACTCAAGAGAAAGGAACTTCTCCAAAATTGGGCATTAAATTGGTGGA
EST: gi|116436360|gb|EG478952.1|EG478952
EST:     TCGAAGGTTGGAATCAGAGGGCGTCATTAAACAAATGTTTCCTCTTCATG                         ATGAACTCAAGAGAAAGGAACTTCTCCAAAATTGGGCATTAAATTGGTGGA
genomic: TCGAAGGTTGGAATCAGAGGGCGTCATTAAACAAATGTTTCCTCTTCATGgtaagctact ... ttggttgtagATGAACTCAAGAGAAAGGAACTTCTCCAAAATTGGGCATTAAATTGGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaggagtctagactctagatggttaagaattctcacaaaaacatttggttgtagATGAACTCAAGAGAAAGGAACTTCTCCAAAATTGGGCATTAAATTGGTGGAACTGCACAAACCAACCAATTGATCAGATCTACTCTTACTTTGGTGCAAA
                              ttctcac  putative branch site (score: 2)
                                     aaaaacattt  TA-rich tract