Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgatttttgctttttgtaattgcaccatgccatggccatgaaagttgttcactcatcttcaataaacttgcctaagaaaaaggttatgtgcagatactgatttttttatgctggtatgcagGCCCAGATGATTGTAGAAAATGTTCACCTTCATATAATGCCATCATTGAATCCTGATGGCTTTTCAATCAGGAAACGTAATAATGCAAATAATGTGGATC

Basic information

species Arabidopsis thaliana
transcript AT1G71696.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71696.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA10G36590.1 (Glycine max), 3'ss of exon 6
gtaagtgatttttgctttttgtaattgcaccatgccatggccatgaaagttgttcactcatcttcaataaacttgcctaagaaaaaggttatgtgcagatactgatttttttatgctggtatgcagGCCCAGATGATTGTAGAAAATGTTCACCTTCATATAATGCCATCATTGAATCCTGATGGCTTTTCAATCAGGAAACGTAATAATGCAAATAATGTGGATC
                ||  ||| |  || | |||  |  |||   |   |  | | |  | |   ||  | || | ||            | | ||  | |||| ||||   ||      | |||||     ||||||| || ||||||||||||||| || | |||||| ||||||||||||| |||    | || || |||  |||||| |||||| | ||||
------------cagcttcagtattcacatcttgcattttccagtgacactaat-attattttatgattcagtt-ctta----------cttttacaatttctgactttt--gtgacatatttcagGCAACATTGATTGTGGAGAATGTTCACCTTCATTTACTTCCATCAATGAATCCTGATGGTTTTAGTTTAAGAAAGCGTGGTAATGCTAATAATATTGATC

upper sequence: AT1G71696.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA20G31000.1 (Glycine max), 3'ss of exon 6
gtaagtgatttttgctttttgtaattgcaccatgccatggccatgaaagttgttcactcatcttcaataaacttgcctaagaaaaaggttatgtgcagatactgatttttttatgctggtatgcagGCCCAGATGATTGTAGAAAATGTTCACCTTCATATAATGCCATCATTGAATCCTGATGGCTTTTCAATCAGGAAACGTAATAATGCAAATAATGTGGATC
               ||  |||| |  || | |||  | ||||   |   |  |      |  ||| | |  ||   ||            | | ||  | |||| ||||   ||      | |||||     ||||||| || ||||||||||||||| || | |||||| ||||||||||||| |||    | |  || |||  |||||| |||||| | ||||
-------------atttcctgtattcacatcttgcatttgccagtgacactaatattattttatcattcagttt--tta----------cttttacaatttctgactttta-gtgaaatatttcagGCAACATTGATTGTGGAGAATGTTCACCTTCATTTACTTCCATCAATGAATCCTGATGGGTTTAGTTTAAAAAAGCGTGGTAATGCTAATAATATTGATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcctaagaaaaaggttatgtgcagatactgatttttttatgctggtatgcagGCCCAGATGATTGTAGAAAATGTTCACCTTCATATAATGCCATCATTGAATCCTGATGGCTTTTCAATCAGGAAACGTAATAATGCAAATAATGTGGATC
                            tactgat  putative branch site (score: 2)
                           atactgatttttttat  TA-rich tract