1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtatacatttaccctgatatactcataattgctagtagatttactctggtgtcttgactggcaactgcactctgtcacaatctttgaaatatatgcgcagATATCTGTTAAGGAAGACAAGCATAAGAAGGAGATAGTATTGATTTCAGTCAACCGCAGCCACCCAGATTACAAATCCTTCAAGCCAGAGAAAAAGAAAG
species | Arabidopsis thaliana |
transcript | AT1G71350.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
ctggtgtcttgactggcaactgcactctgtcacaatctttgaaatatatgcgcagATATCTGTTAAGGAAGACAAGCATAAGAAGGAGATAGTATTGATTTCAGTCAACCGCAGCCACCCAGATTACAAATCCTTCAAGCCAGAGAAAAAGAAAG
tcttgac putative branch site (score: 3)
aatctttgaaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacatttaccctgatatactcataattgctagtagatttactctggtgtcttgactggcaactgcactctgtcacaatctttgaaatatatgcgcagATATCTGTTAAGGAAGACAAGCATAAGAAGGAGATAGTATTGATTTCAGTCAACCGCAGCCACCCAGATTACAAATCCTTCAAGCCAGAGAAAAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - actcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaatc