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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattgcttcatgttgattgtttatgcaatgaaataatagatttgttgtaaagaaaaactactctgaggccttttggttcttatcttcaaattacagCGATCCAGAACTCATATTTCTAACTGATGGAGCGAGCAAAGGTGTGATGCAAATCTTGAATTGTGTCATACGCGGTCAGAAAGACGGA

Basic information

species Arabidopsis thaliana
transcript AT1G70580.4
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70580.4 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA01G03260.3 (Glycine max), 3'ss of exon 5
--------------gtgattgcttcatgttgattg-tttatgcaatgaaat--------aatagatttgttgtaaagaaaaactactctg-----aggccttttggttcttatcttcaaattacagCGATCCAGAACTCATATTTCTAACTGATGGAGCGAGCAAAGGTGTGATGCAAATCTTGAATTGTGTCATACGCGGTCAGAAAGACGGA
                  |  | |  ||||   |  |||||    | ||||        ||  | | | ||        ||  |  | ||      |     ||| ||||| |  || | |||||| |||||||||||||||| ||| |||||||| || ||||| || |||||||| || || |||  | ||||  | |||||  | || || 
gtattatactctatacagtctcattctgttttctaatttatcttgtaaaatctttctttaaagggtctcttaagtttccaatttgttatgcaaatggattcattgcttcttgt--tccatttacagTGATCCAGAACTCATATATCTCACTGATGGTGCCAGCAAGGGGGTGATGCAGATATTAAATACTATCATCAGAGGTCAAGACGATGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125038538|gb|EL110807.1|EL110807
EST:     ATGGATATCCAAG                         CGATCCAGAACTCATATTTCTAACTGATGGAGCGAGCAAAGGTGTG
genomic: ATGGATATCCAAGgtgattgctt ... caaattacagCGATCCAGAACTCATATTTCTAACTGATGGAGCGAGCAAAGGTGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttgtaaagaaaaactactctgaggccttttggttcttatcttcaaattacagCGATCCAGAACTCATATTTCTAACTGATGGAGCGAGCAAAGGTGTGATGCAAATCTTGAATTGTGTCATACGCGGTCAGAAAGACGGA
                                   ttcttatcttc  CT-rich tract
                                      ttatcttcaaatta  TA-rich tract