Sequence
atgc intronic sequence ATGC exonic sequencegtgattgcttcatgttgattgtttatgcaatgaaataatagatttgttgtaaagaaaaactactctgaggccttttggttcttatcttcaaattacagCGATCCAGAACTCATATTTCTAACTGATGGAGCGAGCAAAGGTGTGATGCAAATCTTGAATTGTGTCATACGCGGTCAGAAAGACGGA
Basic information
species | Arabidopsis thaliana |
transcript | AT1G70580.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G70580.4 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA01G03260.3 (Glycine max), 3'ss of exon 5
--------------gtgattgcttcatgttgattg-tttatgcaatgaaat--------aatagatttgttgtaaagaaaaactactctg-----aggccttttggttcttatcttcaaattacagCGATCCAGAACTCATATTTCTAACTGATGGAGCGAGCAAAGGTGTGATGCAAATCTTGAATTGTGTCATACGCGGTCAGAAAGACGGA
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gtattatactctatacagtctcattctgttttctaatttatcttgtaaaatctttctttaaagggtctcttaagtttccaatttgttatgcaaatggattcattgcttcttgt--tccatttacagTGATCCAGAACTCATATATCTCACTGATGGTGCCAGCAAGGGGGTGATGCAGATATTAAATACTATCATCAGAGGTCAAGACGATGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125038538|gb|EL110807.1|EL110807EST: ATGGATATCCAAG CGATCCAGAACTCATATTTCTAACTGATGGAGCGAGCAAAGGTGTG
genomic: ATGGATATCCAAGgtgattgctt ... caaattacagCGATCCAGAACTCATATTTCTAACTGATGGAGCGAGCAAAGGTGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttgtaaagaaaaactactctgaggccttttggttcttatcttcaaattacagCGATCCAGAACTCATATTTCTAACTGATGGAGCGAGCAAAGGTGTGATGCAAATCTTGAATTGTGTCATACGCGGTCAGAAAGACGGA
ttcttatcttc CT-rich tract
ttatcttcaaatta TA-rich tract