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...tgttcgatattagaaatgggtcttaatgcatcaacttgcaactacttttttattcagagtcaacagttcactttttttaatagtatcaatttatttgtagGTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAG
species | Arabidopsis thaliana |
transcript | AT1G70410.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGTTGTACATCTCAAG GTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGAEST: gi|124723103|gb|EH814505.1|EH814505
genomic: CAGTTGTACATCTCAAGgtacatgaac ... ttatttgtagGTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
EST: CGCCGCCGTTGAATACGCAGTTGTACATCTCAAG GTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGAEST: gi|125240162|gb|EL254247.1|EL254247
genomic: CGCCGCCGTTGAATACGCAGTTGTACATCTCAAGgtacatgaac ... ttatttgtagGTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
EST: GTTGAATACGCAGTTGTACATCTCAAG GTGGAGAGCATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGAEST: gi|86078926|gb|DR374683.1|DR374683
genomic: GTTGAATACGCAGTTGTACATCTCAAGgtacatgaac ... ttatttgtagGTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
EST: ACGCAGTTGTACATCTCAAG GTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGAEST: gi|125211024|gb|EL225978.1|EL225978
genomic: ACGCAGTTGTACATCTCAAGgtacatgaac ... ttatttgtagGTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
EST: CGCCGCCGTTGAATACGCAGTTGTACATCTCAAG GTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
genomic: CGCCGCCGTTGAATACGCAGTTGTACATCTCAAGgtacatgaac ... ttatttgtagGTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
ttttttattcagagtcaacagttcactttttttaatagtatcaatttatttgtagGTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAG
ttttaat putative branch site (score: 3)
tttattt putative PPT
ttcactttttttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttcgatattagaaatgggtcttaatgcatcaacttgcaactacttttttattcagagtcaacagttcactttttttaatagtatcaatttatttgtagGTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC