1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgccgtttcctaattctcaacgaggtgctctttgtgtttgcttcttgtaatcaattcttttgctcatttctcttttgcttaaacagTTTTTATCGATGAAACTTGCAACTGTGAACCCACAAATGGACTTTAACCTTGAAGGTCTTCTTGCAAAAGAT
species | Arabidopsis thaliana |
transcript | AT1G68920.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGACGAAATCATAAACTACGTACAATCACTACAACGCCAAGTTGAG TTTTTATCGATGAAACTTGCAACTGTGAACCCACAAATGGACTTTAACCTTEST: gi|116476258|gb|EG518850.1|EG518850
genomic: TGCTTGACGAAATCATAAACTACGTACAATCACTACAACGCCAAGTTGAGgtatgccgtt ... gcttaaacagTTTTTATCGATGAAACTTGCAACTGTGAACCCACAAATGGACTTTAACCTT
EST: TGCTTGACGAAATCATAAACTACGTACAATCACTACAACGCCAAGTTGAG TTTTTATCGATGAAACTTGCAACTGTGAACCCACAAATGGACTTTAACCTT
genomic: TGCTTGACGAAATCATAAACTACGTACAATCACTACAACGCCAAGTTGAGgtatgccgtt ... gcttaaacagTTTTTATCGATGAAACTTGCAACTGTGAACCCACAAATGGACTTTAACCTT
ttgtgtttgcttcttgtaatcaattcttttgctcatttctcttttgcttaaacagTTTTTATCGATGAAACTTGCAACTGTGAACCCACAAATGGACTTTAACCTTGAAGGTCTTCTTGCAAAAGAT
ttcttttgctcatttc CT-rich tract
taatcaattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccgtttcctaattctcaacgaggtgctctttgtgtttgcttcttgtaatcaattcttttgctcatttctcttttgcttaaacagTTTTTATCGATGAAACTTGCAACTGTGAACCCACAAATGGACTTTAACCTTGAAGGTCTTCTTGCAAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG