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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatatatttcatctcattggaaaaattcaggactagtgttaataacaacagtgttctcatttcgtatttgtttttgataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTCTTTCTTTATTTTCATGTCCCTTGTGTTCTTGAACGAGATTTTGTTCTCT

Basic information

species Arabidopsis thaliana
transcript AT1G67430.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164093321|gb|ES158526.1|ES158526
EST:     TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAGAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAG
genomic: TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAG
EST: gi|125016612|gb|EL088881.1|EL088881
EST:     CAGAGAAGGAAGAGCCTGTCAAAAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC
genomic: CAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC
EST: gi|124920752|gb|EH994437.1|EH994437
EST:     TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTC-AAAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAG
genomic: TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAG
EST: gi|164163051|gb|ES094763.1|ES094763
EST:     TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAGAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCT
genomic: TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCT
EST: gi|124770610|gb|EH860740.1|EH860740
EST:     TGAGTTGATTTTGTCAGAGAAGGAAGAGCCAGTCAAAAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAA
genomic: TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAA
EST: gi|163987297|gb|ES142757.1|ES142757
EST:     TTGTCAGAGAAGGAAGAGCCTGTCAAGAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC
genomic: TTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC
EST: gi|164002507|gb|ES052037.1|ES052037
EST:     TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAGAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAA-TCAGCAGCTTAAGCTTTC
genomic: TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC
EST: gi|124889231|gb|EH968133.1|EH968133
EST:     ATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC
genomic: ATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC
EST: gi|164066743|gb|ES210326.1|ES210326
EST:     GGAAGAGCCTGTCAAGAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGC
genomic: GGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGC
EST: gi|164217898|gb|ES110076.1|ES110076
EST:     TGATTTTGTCAGAGAAGGAAGAGCCTGTCAAGAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC
genomic: TGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC
EST: gi|125229440|gb|EL243525.1|EL243525
EST:     TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAG
genomic: TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actagtgttaataacaacagtgttctcatttcgtatttgtttttgataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTCTTTCTTTATTTTCATGTCCCTTGTGTTCTTGAACGAGATTTTGTTCTCT
                                 tatttgtttttgataa  TA-rich tract