1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaattcttatcatccatcatcatcagtgattttctaacattgcaattgtttttttgtttcaataaaaaaaatggtgtcatctttgatcagAGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTCTGGATTTTTCGAAGCTGAGAGCCCATCCGTTGAAACCCGTAGTGCATTGATTGAATATA
species | Arabidopsis thaliana |
transcript | AT1G65700.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACAT AGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTCEST: gi|164217235|gb|ES147321.1|ES147321
genomic: GGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACATgtaattctta ... ctttgatcagAGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTC
EST: GAGTACAACAACATGTGTTGGGTTTGTTACATCATCAGAGGGGACAACAT AGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTCEST: gi|164101524|gb|ES122683.1|ES122683
genomic: GAGTACAACAACATGTGTTGGGTTTG-TACATCATCAGAGGGGACAACATgtaattctta ... ctttgatcagAGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTC
EST: AACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACAT AGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTCTGGATTTTTCEST: gi|164200742|gb|ES085655.1|ES085655
genomic: AACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACATgtaattctta ... ctttgatcagAGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTCTGGATTTTTC
EST: GGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACAT AGGTGTTATCGGGGA
genomic: GGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACATgtaattctta ... ctttgatcagAGGTGTTATCGGGGA
aacattgcaattgtttttttgtttcaataaaaaaaatggtgtcatctttgatcagAGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTCTGGATTTTTCGAAGCTGAGAGCCCATCCGTTGAAACCCGTAGTGCATTGATTGAATATA
ttctaac putative branch site (score: 1)
tcatcttt putative PPT
aattgtttttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcttatcatccatcatcatcagtgattttctaacattgcaattgtttttttgtttcaataaaaaaaatggtgtcatctttgatcagAGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTCTGGATTTTTCGAAGCTGAGAGCCCATCCGTTGAAACCCGTAGTGCATTGATTGAATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA