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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttggattgttaattggttagtagctttaacaacataatgcagtagttttgagcttgttttctcttattttttatagCACTTCAGTGGGAGAACAATGAGACCGAAAAAGAGATATTCGATACAGCTTCTGTTCTGGCGACTGAAATAGATATTAGTGCTATATATAGATATGTAGG

Basic information

species Arabidopsis thaliana
transcript AT1G65140.1
intron # 5
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctttaacaacataatgcagtagttttgagcttgttttctcttattttttatagCACTTCAGTGGGAGAACAATGAGACCGAAAAAGAGATATTCGATACAGCTTCTGTTCTGGCGACTGAAATAGATATTAGTGCTATATATAGATATGTAGG
  ctttaac  putative branch site (score: 3)
                               cttgttttctcttatt  putative PPT
                                ttgttttctcttattt  TA-rich tract