1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtcaacttatcttgacccgatactttgtgatttaacaatcttgcttttatccttggtgtgatgagttatattgatcttatcggtctttatcaacttcagGTACGAGACTATATTCATGTTGTTGATCTAGCAGATGGCCATATATGTGCGCTTCAAAAGCTAGACGATACTGAAATAG
species | Arabidopsis thaliana |
transcript | AT1G64440.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAACTGACTATACCACTAAAGATGGCACTGGT GTACGAGACTATATTCATGTTGTTGATCTAGCAGATGGCCATATATTTGCGEST: gi|164001668|gb|ES199052.1|ES199052
genomic: GAACTGACTATACCACTAAAGATGGCACTGGTgtaagacttt ... tcaacttcagGTACGAGACTATATTCATGTTGTTGATCTAGCAGATGGCCATATATGTGCG
EST: CTATACCACTAAAAGATGGCACTGGT GTACGAGACTATATTCATGTTGTTGATCTAGCAGATGGCCATATATGTGCG
genomic: CTATACCACT-AAAGATGGCACTGGTgtaagacttt ... tcaacttcagGTACGAGACTATATTCATGTTGTTGATCTAGCAGATGGCCATATATGTGCG
ttttatccttggtgtgatgagttatattgatcttatcggtctttatcaacttcagGTACGAGACTATATTCATGTTGTTGATCTAGCAGATGGCCATATATGTGCGCTTCAAAAGCTAGACGATACTGAAATAG
tattgat putative branch site (score: 3)
tctttatc putative PPT
ttatattgatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcaacttatcttgacccgatactttgtgatttaacaatcttgcttttatccttggtgtgatgagttatattgatcttatcggtctttatcaacttcagGTACGAGACTATATTCATGTTGTTGATCTAGCAGATGGCCATATATGTGCGCTTCAAAAGCTAGACGATACTGAAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - -ccgatac