1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagtattagtagcgtaacccaatttttgaattttgtggttaaccggttttgacaatcttggtttgatactaaaccggttattttgtttctttctttgacagTTTTTGATGCAAGGCAAAGCAGGACGTCACGCACCTGTGTTCAGGAAGTATCAAGAGAAAGCTGATTCCTTTATGTGTTCCTTGTTGGGTAAAAGCTCGA
species | Arabidopsis thaliana |
transcript | AT1G64390.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGCTGGTGTTCAAACCCTTGTTGCCAAG TEST: gi|124997017|gb|EL069286.1|EL069286
genomic: CGCTGGTGTTCAAACCCTTGTTGCCAAGgttagtatta ... tctttgacag-
EST: CGCTGGTGTTCAAACCCTTGTTGCCAAG TEST: gi|116479730|gb|EG522322.1|EG522322
genomic: CGCTGGTGTTCAAACCCTTGTTGCCAAGgttagtatta ... tctttgacag-
EST: AGTTTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAG TTTTTGATGCAAGGCAAAGCAGGACGTCACGCACCTGTGTCCAGGAAGTATEST: gi|124725018|gb|EH816420.1|EH816420
genomic: AGTTTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAGgttagtatta ... tctttgacagTTTTTGATGCAAGGCAAAGCAGGACGTCACGCACCTGTGTTCAGGAAGTAT
EST: AGTTTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAG TTTTTGATGCAAGGCAAAGCAGGACGTACACGCACCTGTGTTCAGGAAGTA
genomic: AGTTTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAGgttagtatta ... tctttgacagTTTTTGATGCAAGGCAAAGCAGGACGT-CACGCACCTGTGTTCAGGAAGTA
ttttgacaatcttggtttgatactaaaccggttattttgtttctttctttgacagTTTTTGATGCAAGGCAAAGCAGGACGTCACGCACCTGTGTTCAGGAAGTATCAAGAGAAAGCTGATTCCTTTATGTGTTCCTTGTTGGGTAAAAGCTCGA
tactaaa putative branch site (score: 1)
ttattttgtttctttc putative PPT
ttattttgtttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtattagtagcgtaacccaatttttgaattttgtggttaaccggttttgacaatcttggtttgatactaaaccggttattttgtttctttctttgacagTTTTTGATGCAAGGCAAAGCAGGACGTCACGCACCTGTGTTCAGGAAGTATCAAGAGAAAGCTGATTCCTTTATGTGTTCCTTGTTGGGTAAAAGCTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT