1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaattcaaacaatcttggttgagtagagaccatacgaggttgttgctgtcttgagactttcaaactaaacctctttttggatatctttgaatacagACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCATGTTGGTCTAGCTCCTGATCTTGAAGGAAGGCTTCCAGTAAAGAAGGTC
species | Arabidopsis thaliana |
transcript | AT1G64350.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCG ACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCAEST: gi|86044889|gb|DR340644.1|DR340644
genomic: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCGgtaattcaaa ... ttgaatacagACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
EST: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCG ACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCAEST: gi|116457542|gb|EG500134.1|EG500134
genomic: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCGgtaattcaaa ... ttgaatacagACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
EST: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCG ACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCAEST: gi|116430790|gb|EG473382.1|EG473382
genomic: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCGgtaattcaaa ... ttgaatacagACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
EST: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCG ACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCAEST: gi|116430791|gb|EG473383.1|EG473383
genomic: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCGgtaattcaaa ... ttgaatacagACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
EST: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCG ACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
genomic: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCGgtaattcaaa ... ttgaatacagACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
gttgctgtcttgagactttcaaactaaacctctttttggatatctttgaatacagACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCATGTTGGTCTAGCTCCTGATCTTGAAGGAAGGCTTCCAGTAAAGAAGGTC
aactaaa putative branch site (score: 2)
tatcttt putative PPT
aaactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcaaacaatcttggttgagtagagaccatacgaggttgttgctgtcttgagactttcaaactaaacctctttttggatatctttgaatacagACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCATGTTGGTCTAGCTCCTGATCTTGAAGGAAGGCTTCCAGTAAAGAAGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG