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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttacttttctttccggttctttgtttgttggcttctctatttgcttaagcggccattgttttgtttcagATGCTTGGAGTTAAGCGCATTGAGCGTGTTCTTCCAACTGGAATACCGCTAACAATTGTTGGTGAG

Basic information

species Arabidopsis thaliana
transcript AT1G63900.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63900.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv07s0104g00630.t01 (Vitis vinifera), 3'ss of exon 5
----------------gtttttacttttctttc-------cggttctttgtttgttggcttctctattt---gcttaagc---ggccattgttttgtttcagATGCTTGGAGTTAAGCGCATTGAGCGTGTTCTTCCAACTGGAATACCGCTAACAATTGTTGGTGAG
                ||||  |  ||   ||        |    |||||  ||   |   |  | |||   ||||||     ||| ||| | || ||| ||||||| ||||| ||||| |||||||| |||||||||||||| | |||  | ||  |||||||||||
gtttgtcctattcagtgtttgcaaattaacttaaaagacacacacctttgcatgcatgtgccgttgtttcaagcttaatttttggcaattatgtt-tttaagATGCTCGGAGTGAAGCGAATTGAGCGGGTTCTTCCAACTGGCACACCTTTGACTGTTGTTGGTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124920878|gb|EH994552.1|EH994552
EST:     ACGCTCGCTTGTACGAGGAACACTTGATTATCCTTCAAGGACTTAAG                         ATGCTTGGAGTTAAGCGCATTGAGCGTGTTCTTCCAACTGGAATACCGCTA
genomic: ACGCTCGCTTGTACGAGGAACACTTGATTAT-CTTCAAGGACTTAAGgtttttactt ... tttgtttcagATGCTTGGAGTTAAGCGCATTGAGCGTGTTCTTCCAACTGGAATACCGCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttctttgtttgttggcttctctatttgcttaagcggccattgttttgtttcagATGCTTGGAGTTAAGCGCATTGAGCGTGTTCTTCCAACTGGAATACCGCTAACAATTGTTGGTGAG
                                            ttttgtttc  CT-rich tract
                                        attgtttt  TA-rich tract