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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgagtaaaagctccacactaaatgttaaaaagttcacatatatggaattgataaaagcaatgaatatatattgcagGCTGCGGGACATGTTGTGGCAATGGTAGGTGACGGAATCAATGACTCACCGGCTCTCGTGGCAGCGGATGTAGGTATGGCGATAGGTGCAGGAACAGACA

Basic information

species Arabidopsis thaliana
transcript AT1G63440.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63440.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 11
---gtacttgagtaaaagctccacacta--aatgttaaaaagttcacatatatggaattgata-aaagcaatgaatatatattgcagGCTGCGGGACATGTTGTGGCAATGGTAGGTGACGGAATCAATGACTCACCGGCTCTCGTGGCAGCGGATGTAGGTATGGCGATAGGTGCAGGAACAGACA
     | ||||  |  |||||||    |  |||  | |  | |    ||   |   | || |  | |    ||  | |||    |||||  ||||  ||   ||||||||||| || || || ||||| |||||||| ||||| || || || ||||| || |||||||| |||||||| |||||||
gtataaattgaaaattagctccaagacatgaataatgactattcgtgattattcccaatgctgtagaatcttgtctttattccacagGCGTCGGGCTATACCGTGGCAATGGTTGGAGATGGCATCAACGACTCACCAGCTCTTGTCGCTGCAGATGTTGGAATGGCGATTGGTGCAGGCACAGACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttaaaaagttcacatatatggaattgataaaagcaatgaatatatattgcagGCTGCGGGACATGTTGTGGCAATGGTAGGTGACGGAATCAATGACTCACCGGCTCTCGTGGCAGCGGATGTAGGTATGGCGATAGGTGCAGGAACAGACA
                        aattgat  putative branch site (score: 4)
                        aattgataaaagcaat  TA-rich tract