1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttagttttctgtggttcagcttttttttttacgtagattctgtcattttggcttcactatatagatggtgacgcagcctcatattcttcttatgttacagGGCACAAGCTATCAAGAAATCCAATGGTGTGCATTTTCAGGAAGAG
species | Arabidopsis thaliana |
transcript | AT1G54510.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTTGCTATGTGTGCATTGTCATAGGTTATTGTGAAGGAGGAGACAT GGCACAAGCTATCAAGAAATCCAATGGTGTGCATTTTCAGGAAGAGEST: gi|86063724|gb|DR359481.1|DR359481
genomic: GCTTGCTATGTGTGCATTGTCATAGGTTATTGTGAAGGAGGAGACATgttagttttc ... tatgttacagGGCACAAGCTATCAAGAAATCCAATGGTGTGCATTTTCAGGAAGAG
EST: GCTTGCTATGTGTGCATTGTCATAGGTTATTGTGAAGGAGGAGACAT GGCACAAGCTATCAAGAAATCCAATGGTGTGCATTTTCAGGAANAN
genomic: GCTTGCTATGTGTGCATTGTCATAGGTTATTGTGAAGGAGGAGACATgttagttttc ... tatgttacagGGCACAAGCTATCAAGAAATCCAATGGTGTGCATTTTCAGGAAGAG
ttttggcttcactatatagatggtgacgcagcctcatattcttcttatgttacagGGCACAAGCTATCAAGAAATCCAATGGTGTGCATTTTCAGGAAGAG
cctcatattcttctt CT-rich tract
tatatagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttttctgtggttcagcttttttttttacgtagattctgtcattttggcttcactatatagatggtgacgcagcctcatattcttcttatgttacagGGCACAAGCTATCAAGAAATCCAATGGTGTGCATTTTCAGGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA