1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgagttcttgcttctgttaacattttgttcctagattagatttatcttcctcaaatatctccttgaaggcacttggagttgcaaatgctttttttttttatgtaaaggattttctctaactcatatcattttttttcggttgcagGCCCTAACCACATGATGTTGGAG
species | Arabidopsis thaliana |
transcript | AT1G54100.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAAC GCCCTAACCACATGATGTTGGAGEST: gi|116420807|gb|EG463399.1|EG463399
genomic: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAACgtgagttctt ... tcggttgcagGCCCTAACCACATGATGTTGGAG
EST: GCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAAC GCCCTAACCACATGATGTTGGAGEST: gi|86061617|gb|DR357374.1|DR357374
genomic: GCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAACgtgagttctt ... tcggttgcagGCCCTAACCACATGATGTTGGAG
EST: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAAC GCCCTAACCACATGATGTTGGAGEST: gi|116420806|gb|EG463398.1|EG463398
genomic: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAACgtgagttctt ... tcggttgcagGCCCTAACCACATGATGTTGGAG
EST: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAAC GCCCTAACCACATGATGTTGGAGEST: gi|116486590|gb|EG529182.1|EG529182
genomic: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAACgtgagttctt ... tcggttgcagGCCCTAACCACATGATGTTGGAG
EST: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAAC GCCCTAACCACATGATGTTGGAGEST: gi|116486594|gb|EG529186.1|EG529186
genomic: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAACgtgagttctt ... tcggttgcagGCCCTAACCACATGATGTTGGAG
EST: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAAC GCCCTAACCACATGATGTTGGAGEST: gi|301502094|gb|HO207634.1|HO207634
genomic: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAACgtgagttctt ... tcggttgcagGCCCTAACCACATGATGTTGGAG
EST: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAAC GCCCTAACCACATGATGTTGGAGEST: gi|301501173|gb|HO206713.1|HO206713
genomic: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAACgtgagttctt ... tcggttgcagGCCCTAACCACATGATGTTGGAG
EST: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAAC GCCCTAACCACATGATGTTGGAGEST: gi|301502366|gb|HO207906.1|HO207906
genomic: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAACgtgagttctt ... tcggttgcagGCCCTAACCACATGATGTTGGAG
EST: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAAC GCCCTAACCACATGATGTTGGAGEST: gi|116486591|gb|EG529183.1|EG529183
genomic: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAACgtgagttctt ... tcggttgcagGCCCTAACCACATGATGTTGGAG
EST: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAAC GCCCTAACCACATGATGTTGGAG
genomic: TGCTGTTGGTTTGAGCCGACAACTCAATGGATCGGTTATACCTTCAGAACgtgagttctt ... tcggttgcagGCCCTAACCACATGATGTTGGAG
tttttttttatgtaaaggattttctctaactcatatcattttttttcggttgcagGCCCTAACCACATGATGTTGGAG
ctctaac putative branch site (score: 2)
tatcattttttttc putative PPT
tcatatcatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcttgcttctgttaacattttgttcctagattagatttatcttcctcaaatatctccttgaaggcacttggagttgcaaatgctttttttttttatgtaaaggattttctctaactcatatcattttttttcggttgcagGCCCTAACCACATGATGTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG