1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttacttttaatcgtagttattttccgcttaactatctatgatcttactaggtttccctcaaattccatttggtctactgcacagGGCCTTGGTAAGACAGTCTCGACTATTGCGCTTATCCTAAAGCAAATGCACGAGGCAAAATTAAAGTCCAAGAATTCAGGCAATCAAGAGGCTGAAGCAT
species | Arabidopsis thaliana |
transcript | AT1G50410.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGAAACTAATAGTTTGCACTGTATGGGAGGGATATTAGCTGATGATCAG GGCCTTGGTAAGACAGTCTCGACTATTGCGCTTATCCTAAAGCAAATGCACEST: gi|86056953|gb|DR352710.1|DR352710
genomic: AGGAAACTAATAGTTTGCACTGTATGGGAGGGATATTAGCTGATGATCAGgttactttta ... tactgcacagGGCCTTGGTAAGACAGTCTCGACTATTGCGCTTATCCTAAAGCAAATGCAC
EST: AGGAAACTAATAGTTTGCACTGTATGGGAGGGATATTAGCTGATGATCAG GGCCTTGGTAAGACAGTCTCGACTATTGCGCTTATCCTAAAGCAAATGCAC
genomic: AGGAAACTAATAGTTTGCACTGTATGGGAGGGATATTAGCTGATGATCAGgttactttta ... tactgcacagGGCCTTGGTAAGACAGTCTCGACTATTGCGCTTATCCTAAAGCAAATGCAC
aactatctatgatcttactaggtttccctcaaattccatttggtctactgcacagGGCCTTGGTAAGACAGTCTCGACTATTGCGCTTATCCTAAAGCAAATGCACGAGGCAAAATTAAAGTCCAAGAATTCAGGCAATCAAGAGGCTGAAGCAT
atcttac putative branch site (score: 3)
tcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttacttttaatcgtagttattttccgcttaactatctatgatcttactaggtttccctcaaattccatttggtctactgcacagGGCCTTGGTAAGACAGTCTCGACTATTGCGCTTATCCTAAAGCAAATGCACGAGGCAAAATTAAAGTCCAAGAATTCAGGCAATCAAGAGGCTGAAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC