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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtccaataatttttaaatcgatccatggaagtttcattgatcaatcaattgagatctatctgatttctgaatggacacattacggtccaaaattcacttcttaaaagttagtctaggttttgaactacatgagacacattgcgaaattttgatatcctaaatataaaatttccacttgcactcttgcagATATTCGCGATGCCGGTTTTCGACATGGTGGAGACATTTCTGGTTAAGAAACTGAATTTCAAACCCTCTACAGTTCTTCGTTTCATTGTACGAAATGTTT

Basic information

species Arabidopsis thaliana
transcript AT1G48640.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G48640.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G127342_T01 (Zea mays), 3'ss of exon 5
gtcagtccaataatttttaaatcgatccatggaagtttcattgatcaatcaattgagatctatctgatttctgaatggacacattacggtccaaaattcacttcttaaaagttagtctaggttttgaactacatgagacacattgcgaaattttgatatcctaaatataaaatttccacttgcactcttgcagATATTCGCGATGCCGGTTTTCGACATGGTGGAGACATTTCTGGTTAAGAAACTGAATTTCAAACCCTCTACAGTTCTTCGTTTCATTGTACGAAATGTTT
                                                   | || |  ||   |||||  | | ||||||| | ||     |   ||  | |      ||||  || | |   | | |  ||| | |  |       |  | || | || |  ||  |||  ||    ||    | | |||||| |||||||||||||| ||||||||| |||||||  | ||||| ||||||||| |||||   |||      |  || ||| ||||||  || |     |
-------------------------------------------------gtactgtgtgctggttgattatt-agtggacac-tgactactgacctttttcattc----agttcctc-atgccatcatcgtcattatatgct------agctatgctctcttctatccaaatgtttatttt---ttttggcagATTTTCGCGATGCCGGTGTTCGACATGATGGAGACGGTCCTGGTGAAGAAACTGCATTTCCCGCCCGGCCTTGCCCTCCGTCTCATTGCCCGGAGCACCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacattgcgaaattttgatatcctaaatataaaatttccacttgcactcttgcagATATTCGCGATGCCGGTTTTCGACATGGTGGAGACATTTCTGGTTAAGAAACTGAATTTCAAACCCTCTACAGTTCTTCGTTTCATTGTACGAAATGTTT
                    tcctaaa  putative branch site (score: 2)
                                            cactctt  putative PPT
         aaattttgatatccta  TA-rich tract