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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgcttttttggttgtgtcttttgcttgttgtgcagagtttatagatatcatcgaacttgctgttctttgttgttattcagtacttaagttcattcacgtttatataattgttcgtgaaattttttctgaaaataagaatgtgaaattttgtagGTGTGGGTTTATAAGAAAGTGGCTGAGGAGAGACTTCCCACTCTAAAAATGTATTCTGACAAAGCGCCTCCAACTGACAAGTTTGCCAAACATGAAGTAA

Basic information

species Arabidopsis thaliana
transcript AT1G48050.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G48050.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G137968_T03 (Zea mays), 3'ss of exon 3
gtaacgcttttttggttgtgtcttttgcttgttgtgcagagtttatagatatcatcgaacttgctgttctttgttgttattcagtacttaagttcattcacgtttatataattgttcgtgaaattttttctgaaaataagaatgtgaaattttgtagGTGTGGGTTTATAAGAAAGTGGCTGAGGAGAGACTTCCCACTCTAAAAATGTATTCTGACAAAGCGCCTCCAACTGACAAGTTTGCCAAACATGAAGTAA
                                                   ||||    |  |  ||| ||||    ||      |  | | |   ||  | | |  ||| ||  | |   |||  |  |||| |  | |    ||    ||  |||||||||||||||||||||   |||||||| | | | |||||| | || | |||||| |||||||| ||||||| ||| || |||||    |||||||| |
------------------------------------------------gcttcattttgcaag--gttttttgagactagatttgaggtgattgtgttagcatgtccata-ttacttgc--aatcatggctgatataatgcccttg----ttaatagGTGTGGGTTTATAAGAAAACAGCTGAGGAAAAATTCCCCACTTTGAAGAAGTATTCGGACAAAGCTCCTCCAAATGATAAATTTGCTTCTCATGAAGTCA

upper sequence: AT1G48050.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G137968_T02 (Zea mays), 3'ss of exon 5
gtaacgcttttttggttgtgtcttttgc-ttgttgtgcagagtttatagatatca--------tcgaacttgctgttctttgttg-----ttattcagtacttaagttcattcacgtttatataattgttcgtgaaatttt---ttctgaaaataagaatgtgaaattttgtagGTGTGGGTTTATAAGAAAGTGGCTGAGGAGAGACTTCCCACTCTAAAAATGTATTCTGACAAAGCGCCTCCAACTGACAAGTTTGCCAAACATGAAGTAA
|||   |   || | ||||   || | |  | |  | ||   |||| ||| ||          |  ||  | ||| |   | |||     || ||    |||  | || |      | | |     ||| | |   | ||    |  ||      | ||||      ||  |||||||||||||||||||||   |||||||| | | | |||||| | || | |||||| |||||||| ||||||| ||| || |||||    |||||||| |
gtaggcccagttcgtttgtcagttatacgctatattccatcatttacagaaatttataataatttaaatcttctgcttcattttgcaaggttttttgagactagatttgaggtgattgtgttagcatgtccatattacttgcaatcatggctgatataatgcccttgttaatagGTGTGGGTTTATAAGAAAACAGCTGAGGAAAAATTCCCCACTTTGAAGAAGTATTCGGACAAAGCTCCTCCAAATGATAAATTTGCTTCTCATGAAGTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatataattgttcgtgaaattttttctgaaaataagaatgtgaaattttgtagGTGTGGGTTTATAAGAAAGTGGCTGAGGAGAGACTTCCCACTCTAAAAATGTATTCTGACAAAGCGCCTCCAACTGACAAGTTTGCCAAACATGAAGTAA
                  aaattttttctgaaaa  TA-rich tract