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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcagactataacttattctaactttaaactttggtctaagtctcttatcttcaaaagaagcttttgtatgtacttgttattgtcattttcccctcctttcagatatgtgagtgctttttcatataagaaagttatctaatttgtgtttctttgtttcataatattggtctagGATAACACTCCAGTAGTCACTACTCAAAGAAGTACAGAAGATGGGGAGCCTGTTGCTGAATCTGTAACAGAAAGCGACTTGAAAGTTACTGTTGAGAAAG

Basic information

species Arabidopsis thaliana
transcript AT1G47550.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163984109|gb|EL982790.1|EL982790
EST:     GGTATAGATATTGTCGAGATGGCCCTTTGGGCAAAG                         GATAACACTCCAGTAGTCACTACTCAAAGAAGTACAGAAGATGGGGAGCCT
genomic: GGTATAGATATTGTCGAGATGGCCCTTTGGGCAAAGgtgcagacta ... attggtctagGATAACACTCCAGTAGTCACTACTCAAAGAAGTACAGAAGATGGGGAGCCT
EST: gi|164216957|gb|ES123061.1|ES123061
EST:     TTCCAAAAGTTGTTGGTATAGATATTGTCGAGATGGCCCTTTGGGCAAAG                         GATAACACTCCAGTA
genomic: TTCCAAAAGTTGTTGGTATAGATATTGTCGAGATGGCCCTTTGGGCAAAGgtgcagacta ... attggtctagGATAACACTCCAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatataagaaagttatctaatttgtgtttctttgtttcataatattggtctagGATAACACTCCAGTAGTCACTACTCAAAGAAGTACAGAAGATGGGGAGCCTGTTGCTGAATCTGTAACAGAAAGCGACTTGAAAGTTACTGTTGAGAAAG
                atctaat  putative branch site (score: 3)
                                tttgtttcataatatt  TA-rich tract