1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcagttattcagcaacaaaactggtaaaacccaagtaagcaaattagttacttgctctcatgctttttttttgttgtaacagACTGACCATGGAGAAGAAGAGTTATGTAGTGTGTATGTACCAACGAATCATCTGTACATAGGAGATGTGTTTCTGGTGAGTAGCGAAGAAATCATAAGGC
species | Arabidopsis thaliana |
transcript | AT1G43130.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTATTGGTGAATACGCATTTGGATTTATTACATCATCGGTGACACTTCAG ACTGACCATGGAGAAGAAGAGTTATGTAGCGTGTATGTACCAACGAATCATEST: gi|116425169|gb|EG467761.1|EG467761
genomic: GTATTGGTGAATACGCATTTGGATTTATTACATCATCGGTGACACTTCAGgtcagttatt ... gttgtaacagACTGACCATGGAGAAGAAGAGTTATGTAGTGTGTATGTACCAACGAATCAT
EST: GTATTGGTGAATACGCATTTGGATTTATTACATCATCGGTGACACTTCAG ACTGACCATGGAGAAGAAGAGTTATGTAGCGTGTATGTACCAACGAATCATEST: gi|116447062|gb|EG489654.1|EG489654
genomic: GTATTGGTGAATACGCATTTGGATTTATTACATCATCGGTGACACTTCAGgtcagttatt ... gttgtaacagACTGACCATGGAGAAGAAGAGTTATGTAGTGTGTATGTACCAACGAATCAT
EST: GTATTGGTGAATACGCATTTGGATTTATTACATCATCGGTGACACTTCAG ACTGACCATGGAGAAGAAGAGTTATGTAGTGTGTATGTACCAACGAATCATEST: gi|164216692|gb|ES095496.1|ES095496
genomic: GTATTGGTGAATACGCATTTGGATTTATTACATCATCGGTGACACTTCAGgtcagttatt ... gttgtaacagACTGACCATGGAGAAGAAGAGTTATGTAGTGTGTATGTACCAACGAATCAT
EST: GTATTGGTGAATACGCATTTGGATTTATTACATCATCGGTGACACTTCAG ACTGACCATGGAGAAGAA
genomic: GTATTGGTGAATACGCATTTGGATTTATTACATCATCGGTGACACTTCAGgtcagttatt ... gttgtaacagACTGACCATGGAGAAGAA
aacccaagtaagcaaattagttacttgctctcatgctttttttttgttgtaacagACTGACCATGGAGAAGAAGAGTTATGTAGTGTGTATGTACCAACGAATCATCTGTACATAGGAGATGTGTTTCTGGTGAGTAGCGAAGAAATCATAAGGC
ctctcatgcttttttt CT-rich tract
tttttttttgttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttattcagcaacaaaactggtaaaacccaagtaagcaaattagttacttgctctcatgctttttttttgttgtaacagACTGACCATGGAGAAGAAGAGTTATGTAGTGTGTATGTACCAACGAATCATCTGTACATAGGAGATGTGTTTCTGGTGAGTAGCGAAGAAATCATAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA