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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagtgaactttatattttgcatggtgatcaaaattttactgtcctagctaatcaaaattttactgtccttgctatttttatttttttaatacagATCCATCAAGATTTAGACTCACACATGAGACATCATTTGTCCGAGAACATGTCAATTCTTGGGCTAGCAATAAATTCTTCTTCTACGTT

Basic information

species Arabidopsis thaliana
transcript AT1G42560.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G42560.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA06G01800.1 (Glycine max), 3'ss of exon 5
gtagag---tgaac--tttatattttgcatggtgatcaaaatttta-ctgtcctagctaatcaaaattttactgtccttgctatttttatttttttaatacagATCCATCAAGATTTAGACTCACACATGAGACATCATTTGTCCGAGAACATGTCAATTCTTGGGCTAGCAATAAATTCTTCTTCTACGTT
||| ||   |||    || ||| ||||  |   | |  || | | | | || |||| |   || | |||||   ||||   ||| |            | |||||||   |||||| |||||||| |||||||||||||||||  | || ||   || |   ||| |||  |    | | | ||||||  ||
gtaaagctatgagtcattaataatttgtttctagcttcaagtatcatcagtactaggtccccacagttttaacatcctcaatatct-----------gttcagATCCTAGAAGATTCAGACTCACTCATGAGACATCATTTGTGAGGGATCACAACAGTATCTGGACTAAAACACCAGTTTCCTTCTATTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcctagctaatcaaaattttactgtccttgctatttttatttttttaatacagATCCATCAAGATTTAGACTCACACATGAGACATCATTTGTCCGAGAACATGTCAATTCTTGGGCTAGCAATAAATTCTTCTTCTACGTT
                                            ttttaat  putative branch site (score: 3)
                          tccttgctatttttat  CT-rich tract
                             ttgctatttttatttt  TA-rich tract