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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgttattatcaaccatcgttagaacttgttcctcttctcctttttgtcttcatgaaaacgtctcgagttttcctgggaacttgttaatgatgactggtcacttgcaaacccacagGTGAATGTGACGGCAGATCATCGTGTCATCTATGGTGCTGATCTTGCACAGTTCTTGCAAACATTGGCAAGCATTATTGAGGACCCAAAGGACCTTACAT

Basic information

species Arabidopsis thaliana
transcript AT1G34430.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G34430.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv18s0072g01000.t01 (Vitis vinifera), 3'ss of exon 5
gtaaatgttattatcaaccatcgttagaacttgttcctcttctcctttttgtcttcatgaaaacgtctcgagttttcctgggaacttgttaatgatgactggtcacttgcaa-acccacagGTGAATGTGACGGCAGATCATCGTGTCATCTATGGTGCTGATCTTGCACAGTTCTTGCAAACATTGGCAAGCATTATTGAGGACCCAAAGGACCTTACAT
               ||   || ||||| ||   ||| |   |      | ||| ||  |    || | || |||   |   |  || |||       ||||  || ||||| | |  ||||||||||| || ||||||||||| || || |||||||||||||| ||    ||||||||||| ||||| |  ||||| || ||||| || || ||||| |
-------------gtaattttccttagatctctctccccaaattgagaatttctacaccatg-tgtttgga-tttattttacagtttctta-----cgctgggaacatgcaatatctgcagGTGAATGTTACAGCAGATCATCGGGTAATATATGGTGCTGATCTGGCTTCTTTCTTGCAAACCTTGGCCAAGATTATAGAAGACCCCAAAGATCTTACTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcgagttttcctgggaacttgttaatgatgactggtcacttgcaaacccacagGTGAATGTGACGGCAGATCATCGTGTCATCTATGGTGCTGATCTTGCACAGTTCTTGCAAACATTGGCAAGCATTATTGAGGACCCAAAGGACCTTACAT
                     tgttaat  putative branch site (score: 3)
                    ttgttaat  TA-rich tract