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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatagcaagcacaagttcagactatcattgaaaatcaagaacaaactatctttgaaagataaatatccctgcggaagtgtttgtagactgttgtatggcaatagaaacatgtcatctttaaaaactcttaatgatgtcttgtttactcgcagGCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAGCTAATACACCAGCAGAGTATGACAGTGATGATGAATATCTTGCTCCAAGGCAACAAATCAGGC

Basic information

species Arabidopsis thaliana
transcript AT1G32400.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116422549|gb|EG465141.1|EG465141
EST:     AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAG                         GCTTTACTCTTCTTGCTTGCCCT
genomic: AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaa ... ttactcgcagGCTTTACTCTTCTTGCTTGCCCT
EST: gi|125173014|gb|EL194864.1|EL194864
EST:     AGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAG                         GCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAGCTAATACACCAGCA
genomic: AGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaa ... ttactcgcagGCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAGCTAATACACCAGCA
EST: gi|116457758|gb|EG500350.1|EG500350
EST:     AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAG                         GCTTTACTCTTCTTGCTT
genomic: AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaa ... ttactcgcagGCTTTACTCTTCTTGCTT
EST: gi|125188412|gb|EL203366.1|EL203366
EST:     AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAG                         GCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGG
genomic: AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaa ... ttactcgcagGCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGG
EST: gi|116422550|gb|EG465142.1|EG465142
EST:     AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAG                         GCTTTACTCTTCTTGCTT
genomic: AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaa ... ttactcgcagGCTTTACTCTTCTTGCTT
EST: gi|125283421|gb|EL297506.1|EL297506
EST:     GATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAG                         GCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAG
genomic: GATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaa ... ttactcgcagGCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAG
EST: gi|164032252|gb|ES153953.1|ES153953
EST:     AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAG                         GCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAGC
genomic: AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaa ... ttactcgcagGCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaatagaaacatgtcatctttaaaaactcttaatgatgtcttgtttactcgcagGCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAGCTAATACACCAGCAGAGTATGACAGTGATGATGAATATCTTGCTCCAAGGCAACAAATCAGGC
                            tcttaat  putative branch site (score: 3)
                                       tcttgttt  putative PPT
                   tttaaaaactcttaat  TA-rich tract