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gcaagatccgagagacttcttcagatgcgctgcatatttttttttttatctcgataatataagattttttttttcatatcaagacgtgtctgtgagatttcattttacaaatataagtgatggagcacttacactatttctttttttcttaaaaaataaacagTGATTCAAGAAACCCCTTTGTAGAGCATGCGATACAGTATGCTATAGCTGCTGCTCATTTGGCAACCGAGAAGGACAAAGAATCATTGCACAAACTCTTA
species | Arabidopsis thaliana |
transcript | AT1G31910.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGTATAAACTGTCACTGAATCATTTGACTCTTCAGTCTGTGTCTGCAAG TGATTCAAGAAACCCCTTTEST: gi|125218633|gb|EL232716.1|EL232716
genomic: ATGTATAAACTGTCACTGAATCATTTGACTCTTCAGTCTGTGTCTGCAAGgcaagatccg ... aaataaacagTGATTCAAGAAACCCCTTT
EST: TTTGACTCTTCAGTCTGTGTCTGCAAG TGATTCAAGAAACCCCTTTGTAGAGCATGCGATACAGTATGCTATAGCTGCEST: gi|164130887|gb|EL984048.1|EL984048
genomic: TTTGACTCTTCAGTCTGTGTCTGCAAGgcaagatccg ... aaataaacagTGATTCAAGAAACCCCTTTGTAGAGCATGCGATACAGTATGCTATAGCTGC
EST: GTCTGTGTCTACAAG TGATTCAAGAAACCCCTTTGTAGAGCATGCGATACAGTATGCTATAGCTGC
genomic: GTCTGTGTCTGCAAGgcaagatccg ... aaataaacagTGATTCAAGAAACCCCTTTGTAGAGCATGCGATACAGTATGCTATAGCTGC
aaatataagtgatggagcacttacactatttctttttttcttaaaaaataaacagTGATTCAAGAAACCCCTTTGTAGAGCATGCGATACAGTATGCTATAGCTGCTGCTCATTTGGCAACCGAGAAGGACAAAGAATCATTGCACAAACTCTTA
cacttac putative branch site (score: 2)
acttacactatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagatccgagagacttcttcagatgcgctgcatatttttttttttatctcgataatataagattttttttttcatatcaagacgtgtctgtgagatttcattttacaaatataagtgatggagcacttacactatttctttttttcttaaaaaataaacagTGATTCAAGAAACCCCTTTGTAGAGCATGCGATACAGTATGCTATAGCTGCTGCTCATTTGGCAACCGAGAAGGACAAAGAATCATTGCACAAACTCTTA
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