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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacacatatatccttagatcccttagtctttcttcagaacaggatctatatgaatcttgtcttttaagccagagagggtaacacaagtttatatttcagTCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAAGACTGGACTCCAAGACACAATTTCAGACCTCCAGGATCTGTCCCGCATC

Basic information

species Arabidopsis thaliana
transcript AT1G31880.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116385343|gb|EG427935.1|EG427935
EST:     AGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAG                         TCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAA
genomic: AGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAGgtaaacacat ... tatatttcagTCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAA
EST: gi|116385353|gb|EG427945.1|EG427945
EST:     AGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAG                         TCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAA
genomic: AGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAGgtaaacacat ... tatatttcagTCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAA
EST: gi|116385350|gb|EG427942.1|EG427942
EST:     AGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAG                         TCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAA
genomic: AGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAGgtaaacacat ... tatatttcagTCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAA
EST: gi|116385340|gb|EG427932.1|EG427932
EST:     AGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAG                         TCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAA
genomic: AGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAGgtaaacacat ... tatatttcagTCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAA
EST: gi|116385341|gb|EG427933.1|EG427933
EST:     AGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAG                         TCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAA
genomic: AGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAGgtaaacacat ... tatatttcagTCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAA
EST: gi|116385359|gb|EG427951.1|EG427951
EST:     AGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAG                         TCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAA
genomic: AGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAGgtaaacacat ... tatatttcagTCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatatgaatcttgtcttttaagccagagagggtaacacaagtttatatttcagTCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAAGACTGGACTCCAAGACACAATTTCAGACCTCCAGGATCTGTCCCGCATC
                               gggtaac  putative branch site (score: 3)
                                      acaagtttatattt  TA-rich tract