1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaacatttctttttgtcaaaaacactctgttcattgtttgatctttgtgctattaacctgaaaaccgaaattgtagGTGCGAAGCTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCGACAGTCTTTTTACCTTGGAGAGTCACAG
species | Arabidopsis thaliana |
transcript | AT1G31850.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCGGGACTTACCACGACTG GTGCGAAGCTTTCTCGACGTATCCAAGAACATATGATCTTCTTCACCTCGAEST: gi|86064121|gb|DR359878.1|DR359878
genomic: TCGGGACTTACCACGACTGgtaacatttc ... gaaattgtagGTGCGAAGCTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCGA
EST: TCGCTTCCTGTTGTCTTTGATCGCGGTCTCATCGGGACTTACCACGACTG GTGCGAAGCTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCGAEST: gi|86064117|gb|DR359874.1|DR359874
genomic: TCGCTTCCTGTTGTCTTTGATCGCGGTCTCATCGGGACTTACCACGACTGgtaacatttc ... gaaattgtagGTGCGAAGCTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCGA
EST: TCGCTTCCTGTTGTCTTTGATCGCGGTCTCATCGGGACTTACCACGACTG GTGCGAAGCTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCGAEST: gi|86064120|gb|DR359877.1|DR359877
genomic: TCGCTTCCTGTTGTCTTTGATCGCGGTCTCATCGGGACTTACCACGACTGgtaacatttc ... gaaattgtagGTGCGAAGCTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCGA
EST: TCGCTTCCTGTTGTCTTTGATCGCGGTCTCATCGGGACTTACCACGACTG GTGCGAA-CGTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCG
genomic: TCGCTTCCTGTTGTCTTTGATCGCGGTCTCATCGGGACTTACCACGACTGgtaacatttc ... gaaattgtagGTGCGAAGC-TTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCG
acactctgttcattgtttgatctttgtgctattaacctgaaaaccgaaattgtagGTGCGAAGCTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCGACAGTCTTTTTACCTTGGAGAGTCACAG
tattaac putative branch site (score: 1)
aaattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatttctttttgtcaaaaacactctgttcattgtttgatctttgtgctattaacctgaaaaccgaaattgtagGTGCGAAGCTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCGACAGTCTTTTTACCTTGGAGAGTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA