Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgttcgaactttactcagtagttttcattttcctaccattttatcccttacttccttgcattcacgtcagcttcataatagtatcttcatctaaatctttgtgtgtcttttcttttgcattcacctcgattctctaactgatttccatccctttgggactttgcagGTTCTATTTCTGATGTATCATTATTTTGCGGCAGTTGAGTTTTACAATGCAATCAGGGTCTTCATCGCTGGCTATGTGTGGATGACCGGTTTTGGGAACT

Basic information

species Arabidopsis thaliana
transcript AT1G29890.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G29890.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G458538_T01 (Zea mays), 3'ss of exon 1
gtactgtgttcgaactttactcagtagttttcattttcctaccattttatcccttacttccttgcattcacgtcagcttcataatagtatcttcatctaaatctttgtgtgtcttttcttttgcattcacctcgattctctaactgatttccatccctttgggactttgcagGTTCTATTTCTGATGTATCATTATTTTGCGGCAGTTGAGTTTTACAATGCAATCAGGGTCTTCATCGCTGGCTATGTGTGGATGACCGGTTTTGGGAACT
|| | | ||| ||| || || ||| ||||| ||||||||||||| ||||||||||| || |||| | |||||||||||| | || ||||| ||| ||||||| |||||||| || |||||||| |
-------------------------------------------------------------------------------------------------------------------------------------gagtgt---actaattattcgttctgtg----tttccagGTCTTATTTCTGATGTACCATTATTTTGCTGCTTCTGAGATATACAATGCAATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125118671|gb|EL167301.1|EL167301
EST:     TTCTGTATCTCAATCGTCACCAGACTGAAGAATGGAAAGGGTGGATGCAG                         GTTCTATTTCTGATGTATCA
genomic: TTCTGTATCTCAATCGTCACCAGACTGAAGAATGGAAAGGGTGGATGCAGgtactgtgtt ... gactttgcagGTTCTATTTCTGATGTATCA