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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgttcgaactttactcagtagttttcattttcctaccattttatcccttacttccttgcattcacgtcagcttcataatagtatcttcatctaaatctttgtgtgtcttttcttttgcattcacctcgattctctaactgatttccatccctttgggactttgcagGTTCTATTTCTGATGTATCATTATTTTGCGGCAGTTGAGTTTTACAATGCAATCAGGGTCTTCATCGCTGGCTATGTGTGGATGACCGGTTTTGGGAACT

Basic information

species Arabidopsis thaliana
transcript AT1G29890.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G29890.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G458538_T01 (Zea mays), 3'ss of exon 1
gtactgtgttcgaactttactcagtagttttcattttcctaccattttatcccttacttccttgcattcacgtcagcttcataatagtatcttcatctaaatctttgtgtgtcttttcttttgcattcacctcgattctctaactgatttccatccctttgggactttgcagGTTCTATTTCTGATGTATCATTATTTTGCGGCAGTTGAGTTTTACAATGCAATCAGGGTCTTCATCGCTGGCTATGTGTGGATGACCGGTTTTGGGAACT
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-------------------------------------------------------------------------------------------------------------------------------------gagtgt---actaattattcgttctgtg----tttccagGTCTTATTTCTGATGTACCATTATTTTGCTGCTTCTGAGATATACAATGCAATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125118671|gb|EL167301.1|EL167301
EST:     TTCTGTATCTCAATCGTCACCAGACTGAAGAATGGAAAGGGTGGATGCAG                         GTTCTATTTCTGATGTATCA
genomic: TTCTGTATCTCAATCGTCACCAGACTGAAGAATGGAAAGGGTGGATGCAGgtactgtgtt ... gactttgcagGTTCTATTTCTGATGTATCA